GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1BG048250 [ TRIDC1BG048250]	1B	516889484	516893636	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1BG048250.1 TRIDC1BG048250.1	High	No	534	OG0061313		Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -35.449 AMFE: -0.615 GC content %: 57.678
Tdicoccoides_TRIDC1BG048250.2 TRIDC1BG048250.2	High	No	537	OG0061313		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -36.182 AMFE: -0.627 GC content %: 57.728
Tdicoccoides_TRIDC1BG048250.3 TRIDC1BG048250.3	High	No	853	OG0354438		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -26.635 AMFE: -0.622 GC content %: 42.790

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).