Tdicoccoides TRIDC1BG049370
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG049370 [ TRIDC1BG049370] |
1B | 527474450 | 527477078 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG049370.1 TRIDC1BG049370.1 |
Low | No | 1626 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -33.585 AMFE: -0.669 GC content %: 50.185 | |
| Tdicoccoides_TRIDC1BG049370.10 TRIDC1BG049370.10 |
Low | No | 639 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.055 Folding energies... MFEI: -29.343 AMFE: -0.633 GC content %: 46.322 | |
| Tdicoccoides_TRIDC1BG049370.11 TRIDC1BG049370.11 |
Low | No | 925 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.115 Folding energies... MFEI: -27.784 AMFE: -0.647 GC content %: 42.919 | |
| Tdicoccoides_TRIDC1BG049370.12 TRIDC1BG049370.12 |
Low | No | 871 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -26.131 AMFE: -0.629 GC content %: 41.561 | |
| Tdicoccoides_TRIDC1BG049370.2 TRIDC1BG049370.2 |
Low | No | 891 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -35.758 AMFE: -0.640 GC content %: 55.892 | |
| Tdicoccoides_TRIDC1BG049370.3 TRIDC1BG049370.3 |
Low | No | 1054 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -30.351 AMFE: -0.662 GC content %: 45.825 | |
| Tdicoccoides_TRIDC1BG049370.4 TRIDC1BG049370.4 |
Low | No | 1269 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.327 Folding energies... MFEI: -29.236 AMFE: -0.654 GC content %: 44.681 | |
| Tdicoccoides_TRIDC1BG049370.5 TRIDC1BG049370.5 |
Low | No | 996 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.114 Folding energies... MFEI: -29.659 AMFE: -0.665 GC content %: 44.578 | |
| Tdicoccoides_TRIDC1BG049370.6 TRIDC1BG049370.6 |
Low | No | 1256 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.156 Folding energies... MFEI: -29.443 AMFE: -0.670 GC content %: 43.949 | |
| Tdicoccoides_TRIDC1BG049370.7 TRIDC1BG049370.7 |
Low | No | 646 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.055 Folding energies... MFEI: -30.201 AMFE: -0.650 GC content %: 46.440 | |
| Tdicoccoides_TRIDC1BG049370.8 TRIDC1BG049370.8 |
Low | No | 662 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -30.680 AMFE: -0.657 GC content %: 46.677 | |
| Tdicoccoides_TRIDC1BG049370.9 TRIDC1BG049370.9 |
Low | No | 698 | OG0000760 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -30.845 AMFE: -0.658 GC content %: 46.848 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG049370.7 | SwissProt | 2021-04-01 | Q54GB2 | 2.02e-19 |
| Tdicoccoides_TRIDC1BG049370.2 | SwissProt | 2021-04-01 | Q54GB2 | 5.08e-7 |
| Tdicoccoides_TRIDC1BG049370.8 | SwissProt | 2021-04-01 | Q54GB2 | 2.31e-19 |
| Tdicoccoides_TRIDC1BG049370.3 | SwissProt | 2021-04-01 | Q54GB2 | 6.25e-14 |
| Tdicoccoides_TRIDC1BG049370.1 | SwissProt | 2021-04-01 | Q54GB2 | 1.74e-17 |
| Tdicoccoides_TRIDC1BG049370.9 | SwissProt | 2021-04-01 | Q54GB2 | 3.13e-19 |
| Tdicoccoides_TRIDC1BG049370.4 | SwissProt | 2021-04-01 | P58466 | 6.41e-15 |
| Tdicoccoides_TRIDC1BG049370.10 | SwissProt | 2021-04-01 | Q54GB2 | 1.92e-19 |
| Tdicoccoides_TRIDC1BG049370.5 | SwissProt | 2021-04-01 | Q54GB2 | 2.37e-18 |
| Tdicoccoides_TRIDC1BG049370.11 | SwissProt | 2021-04-01 | Q54GB2 | 1.55e-18 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
