Tdicoccoides TRIDC1BG059940
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG059940 [ TRIDC1BG059940] |
1B | 609463808 | 609471140 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG059940.1 TRIDC1BG059940.1 |
Low | No | 4253 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -30.299 AMFE: -0.684 GC content %: 44.298 | |
| Tdicoccoides_TRIDC1BG059940.10 TRIDC1BG059940.10 |
Low | No | 3329 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -30.994 AMFE: -0.680 GC content %: 45.599 | |
| Tdicoccoides_TRIDC1BG059940.11 TRIDC1BG059940.11 |
Low | No | 2455 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -32.880 AMFE: -0.681 GC content %: 48.310 | |
| Tdicoccoides_TRIDC1BG059940.12 TRIDC1BG059940.12 |
High | No | 698 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -25.215 AMFE: -0.642 GC content %: 39.255 | |
| Tdicoccoides_TRIDC1BG059940.13 TRIDC1BG059940.13 |
Low | No | 4443 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -30.110 AMFE: -0.685 GC content %: 43.979 | |
| Tdicoccoides_TRIDC1BG059940.14 TRIDC1BG059940.14 |
Low | No | 2638 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -32.680 AMFE: -0.683 GC content %: 47.877 | |
| Tdicoccoides_TRIDC1BG059940.15 TRIDC1BG059940.15 |
Low | No | 3367 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -31.429 AMFE: -0.686 GC content %: 45.797 | |
| Tdicoccoides_TRIDC1BG059940.16 TRIDC1BG059940.16 |
Low | No | 4051 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.271 AMFE: -0.681 GC content %: 44.483 | |
| Tdicoccoides_TRIDC1BG059940.17 TRIDC1BG059940.17 |
Low | No | 3256 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -31.361 AMFE: -0.685 GC content %: 45.762 | |
| Tdicoccoides_TRIDC1BG059940.18 TRIDC1BG059940.18 |
Low | No | 2487 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -32.549 AMFE: -0.681 GC content %: 47.768 | |
| Tdicoccoides_TRIDC1BG059940.19 TRIDC1BG059940.19 |
Low | No | 3411 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -30.783 AMFE: -0.679 GC content %: 45.324 | |
| Tdicoccoides_TRIDC1BG059940.2 TRIDC1BG059940.2 |
Low | No | 3332 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -30.630 AMFE: -0.677 GC content %: 45.228 | |
| Tdicoccoides_TRIDC1BG059940.20 TRIDC1BG059940.20 |
Low | No | 3177 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -31.095 AMFE: -0.680 GC content %: 45.703 | |
| Tdicoccoides_TRIDC1BG059940.21 TRIDC1BG059940.21 |
Low | No | 4020 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -30.448 AMFE: -0.683 GC content %: 44.552 | |
| Tdicoccoides_TRIDC1BG059940.22 TRIDC1BG059940.22 |
Low | No | 3374 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -31.073 AMFE: -0.683 GC content %: 45.465 | |
| Tdicoccoides_TRIDC1BG059940.23 TRIDC1BG059940.23 |
Low | No | 3233 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -31.547 AMFE: -0.688 GC content %: 45.871 | |
| Tdicoccoides_TRIDC1BG059940.24 TRIDC1BG059940.24 |
Low | No | 3049 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -31.604 AMFE: -0.686 GC content %: 46.081 | |
| Tdicoccoides_TRIDC1BG059940.25 TRIDC1BG059940.25 |
Low | No | 4421 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -30.235 AMFE: -0.686 GC content %: 44.085 | |
| Tdicoccoides_TRIDC1BG059940.26 TRIDC1BG059940.26 |
Low | No | 3149 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -31.359 AMFE: -0.684 GC content %: 45.824 | |
| Tdicoccoides_TRIDC1BG059940.27 TRIDC1BG059940.27 |
Low | No | 3297 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -31.523 AMFE: -0.690 GC content %: 45.708 | |
| Tdicoccoides_TRIDC1BG059940.28 TRIDC1BG059940.28 |
Low | No | 3400 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -31.303 AMFE: -0.689 GC content %: 45.441 | |
| Tdicoccoides_TRIDC1BG059940.29 TRIDC1BG059940.29 |
Low | No | 3618 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -30.893 AMFE: -0.684 GC content %: 45.163 | |
| Tdicoccoides_TRIDC1BG059940.3 TRIDC1BG059940.3 |
Low | No | 3303 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -31.160 AMFE: -0.682 GC content %: 45.716 | |
| Tdicoccoides_TRIDC1BG059940.30 TRIDC1BG059940.30 |
Low | No | 3541 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -30.731 AMFE: -0.682 GC content %: 45.072 | |
| Tdicoccoides_TRIDC1BG059940.31 TRIDC1BG059940.31 |
Low | No | 3345 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -31.572 AMFE: -0.689 GC content %: 45.830 | |
| Tdicoccoides_TRIDC1BG059940.32 TRIDC1BG059940.32 |
Low | No | 3837 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -30.646 AMFE: -0.682 GC content %: 44.905 | |
| Tdicoccoides_TRIDC1BG059940.33 TRIDC1BG059940.33 |
Low | No | 3027 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -31.090 AMFE: -0.677 GC content %: 45.920 | |
| Tdicoccoides_TRIDC1BG059940.34 TRIDC1BG059940.34 |
Low | No | 2286 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -33.066 AMFE: -0.684 GC content %: 48.338 | |
| Tdicoccoides_TRIDC1BG059940.35 TRIDC1BG059940.35 |
Low | No | 1525 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -36.964 AMFE: -0.687 GC content %: 53.770 | |
| Tdicoccoides_TRIDC1BG059940.36 TRIDC1BG059940.36 |
Low | No | 491 | OG0354619 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -43.238 AMFE: -0.692 GC content %: 62.525 | |
| Tdicoccoides_TRIDC1BG059940.4 TRIDC1BG059940.4 |
Low | No | 3408 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -30.745 AMFE: -0.678 GC content %: 45.335 | |
| Tdicoccoides_TRIDC1BG059940.5 TRIDC1BG059940.5 |
Low | No | 3229 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -31.456 AMFE: -0.682 GC content %: 46.144 | |
| Tdicoccoides_TRIDC1BG059940.6 TRIDC1BG059940.6 |
Low | No | 3452 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -30.721 AMFE: -0.677 GC content %: 45.394 | |
| Tdicoccoides_TRIDC1BG059940.7 TRIDC1BG059940.7 |
Low | No | 3307 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -31.143 AMFE: -0.680 GC content %: 45.782 | |
| Tdicoccoides_TRIDC1BG059940.8 TRIDC1BG059940.8 |
Low | No | 3112 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -31.398 AMFE: -0.682 GC content %: 46.015 | |
| Tdicoccoides_TRIDC1BG059940.9 TRIDC1BG059940.9 |
Low | No | 3188 | OG0000129 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -31.383 AMFE: -0.682 GC content %: 46.016 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG059940.36 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC1BG059940.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.31 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/DIRS | |
| Tdicoccoides_TRIDC1BG059940.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Tdicoccoides_TRIDC1BG059940.32 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1; LTR/DIRS |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
