GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1BG061240 [ TRIDC1BG061240]	1B	619573486	619576999	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1BG061240.1 TRIDC1BG061240.1	High	No	2441	OG0002852		Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -28.120 AMFE: -0.646 GC content %: 43.548
Tdicoccoides_TRIDC1BG061240.12 TRIDC1BG061240.12	High	No	1059	OG0022826		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -28.754 AMFE: -0.604 GC content %: 47.592
Tdicoccoides_TRIDC1BG061240.4 TRIDC1BG061240.4	High	No	796	OG0022826		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -30.364 AMFE: -0.610 GC content %: 49.749
Tdicoccoides_TRIDC1BG061240.7 TRIDC1BG061240.7	High	No	1042	OG0022826		Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -28.512 AMFE: -0.616 GC content %: 46.257

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).