GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1BG063730 [ TRIDC1BG063730]	1B	636337810	636347360	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1BG063730.15 TRIDC1BG063730.15	Low	No	366	OG0354688		Get ORF Coding potential... Type: coding Potential: 0.181 Folding energies... MFEI: -24.126 AMFE: -0.545 GC content %: 44.262
Tdicoccoides_TRIDC1BG063730.16 TRIDC1BG063730.16	High	No	410	OG0019506		Get ORF Coding potential... Type: noncoding Potential: -0.729 Folding energies... MFEI: -27.585 AMFE: -0.650 GC content %: 42.439
Tdicoccoides_TRIDC1BG063730.3 TRIDC1BG063730.3	Low	No	546	OG0354689		Get ORF Coding potential... Type: noncoding Potential: -0.585 Folding energies... MFEI: -39.212 AMFE: -0.598 GC content %: 65.568

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC1BG063730.3	SwissProt	2021-04-01	Q54GS8	2.16e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).