Tdicoccoides TRIDC1BG069780
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG069780 [ TRIDC1BG069780] |
1B | 667372052 | 667376653 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG069780.11 TRIDC1BG069780.11 |
High | No | 864 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -33.113 AMFE: -0.636 GC content %: 52.083 | |
| Tdicoccoides_TRIDC1BG069780.12 TRIDC1BG069780.12 |
High | No | 772 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -34.262 AMFE: -0.645 GC content %: 53.109 | |
| Tdicoccoides_TRIDC1BG069780.2 TRIDC1BG069780.2 |
High | No | 873 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -29.313 AMFE: -0.621 GC content %: 47.194 | |
| Tdicoccoides_TRIDC1BG069780.3 TRIDC1BG069780.3 |
High | No | 1079 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -0.631 Folding energies... MFEI: -34.208 AMFE: -0.649 GC content %: 52.734 | |
| Tdicoccoides_TRIDC1BG069780.4 TRIDC1BG069780.4 |
High | No | 925 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -33.968 AMFE: -0.641 GC content %: 52.973 | |
| Tdicoccoides_TRIDC1BG069780.5 TRIDC1BG069780.5 |
High | No | 468 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -31.004 AMFE: -0.648 GC content %: 47.863 | |
| Tdicoccoides_TRIDC1BG069780.6 TRIDC1BG069780.6 |
High | No | 1104 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -32.210 AMFE: -0.640 GC content %: 50.362 | |
| Tdicoccoides_TRIDC1BG069780.7 TRIDC1BG069780.7 |
High | No | 695 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -27.381 AMFE: -0.586 GC content %: 46.763 | |
| Tdicoccoides_TRIDC1BG069780.9 TRIDC1BG069780.9 |
High | No | 836 | OG0000554 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -27.500 AMFE: -0.616 GC content %: 44.617 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
