Tdicoccoides TRIDC2AG013510
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG013510 [ TRIDC2AG013510] |
2A | 65796485 | 65799380 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG013510.1 TRIDC2AG013510.1 |
Low | No | 2289 | OG0006593 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -26.706 AMFE: -0.602 GC content %: 44.386 | |
| Tdicoccoides_TRIDC2AG013510.2 TRIDC2AG013510.2 |
Low | No | 2442 | OG0006593 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -28.460 AMFE: -0.615 GC content %: 46.314 | |
| Tdicoccoides_TRIDC2AG013510.3 TRIDC2AG013510.3 |
Low | No | 2478 | OG0006593 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -28.027 AMFE: -0.605 GC content %: 46.287 | |
| Tdicoccoides_TRIDC2AG013510.4 TRIDC2AG013510.4 |
Low | No | 600 | OG0006593 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -36.017 AMFE: -0.649 GC content %: 55.500 | |
| Tdicoccoides_TRIDC2AG013510.5 TRIDC2AG013510.5 |
High | No | 305 | OG0355002 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -34.557 AMFE: -0.579 GC content %: 59.672 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG013510.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG013510.1 | SwissProt | 2021-04-01 | Q8LGG8 | 3.52e-8 |
| Tdicoccoides_TRIDC2AG013510.2 | SwissProt | 2021-04-01 | Q8LGG8 | 2.66e-8 |
| Tdicoccoides_TRIDC2AG013510.4 | SwissProt | 2021-04-01 | Q8LGG8 | 1.61e-4 |
| Tdicoccoides_TRIDC2AG013510.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG013510.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
