Tdicoccoides TRIDC2AG021160
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG021160 [ TRIDC2AG021160] |
2A | 122841324 | 122865586 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG021160.1 TRIDC2AG021160.1 |
High | No | 1712 | OG0355127 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -27.132 AMFE: -0.652 GC content %: 41.589 | |
| Tdicoccoides_TRIDC2AG021160.10 TRIDC2AG021160.10 |
High | No | 891 | OG0015186 | Get ORF Coding potential... Type: noncoding Potential: -1.336 Folding energies... MFEI: -29.203 AMFE: -0.576 GC content %: 50.730 | |
| Tdicoccoides_TRIDC2AG021160.12 TRIDC2AG021160.12 |
High | No | 747 | OG0015186 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.357 AMFE: -0.574 GC content %: 51.138 | |
| Tdicoccoides_TRIDC2AG021160.15 TRIDC2AG021160.15 |
High | No | 583 | OG0015186 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -33.276 AMFE: -0.612 GC content %: 54.374 | |
| Tdicoccoides_TRIDC2AG021160.16 TRIDC2AG021160.16 |
High | No | 571 | OG0015186 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -33.047 AMFE: -0.609 GC content %: 54.291 | |
| Tdicoccoides_TRIDC2AG021160.2 TRIDC2AG021160.2 |
High | No | 1140 | OG0015990 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -29.825 AMFE: -0.665 GC content %: 44.825 | |
| Tdicoccoides_TRIDC2AG021160.5 TRIDC2AG021160.5 |
High | No | 1024 | OG0024616 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -27.686 AMFE: -0.615 GC content %: 45.020 | |
| Tdicoccoides_TRIDC2AG021160.6 TRIDC2AG021160.6 |
High | No | 1170 | OG0355128 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -28.991 AMFE: -0.601 GC content %: 48.205 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
