Tdicoccoides TRIDC2AG030030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG030030 [ TRIDC2AG030030] |
2A | 228345826 | 228349586 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG030030.1 TRIDC2AG030030.1 |
Low | No | 1521 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -29.586 AMFE: -0.598 GC content %: 49.507 | |
| Tdicoccoides_TRIDC2AG030030.11 TRIDC2AG030030.11 |
Low | No | 1003 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -29.990 AMFE: -0.596 GC content %: 50.349 | |
| Tdicoccoides_TRIDC2AG030030.12 TRIDC2AG030030.12 |
High | No | 1599 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -27.936 AMFE: -0.634 GC content %: 44.090 | |
| Tdicoccoides_TRIDC2AG030030.14 TRIDC2AG030030.14 |
High | No | 1785 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -30.101 AMFE: -0.643 GC content %: 46.779 | |
| Tdicoccoides_TRIDC2AG030030.15 TRIDC2AG030030.15 |
High | No | 1699 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -29.882 AMFE: -0.631 GC content %: 47.381 | |
| Tdicoccoides_TRIDC2AG030030.17 TRIDC2AG030030.17 |
Low | No | 1662 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -29.747 AMFE: -0.620 GC content %: 47.954 | |
| Tdicoccoides_TRIDC2AG030030.18 TRIDC2AG030030.18 |
High | No | 1452 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -29.043 AMFE: -0.647 GC content %: 44.904 | |
| Tdicoccoides_TRIDC2AG030030.19 TRIDC2AG030030.19 |
Low | No | 1650 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -30.703 AMFE: -0.638 GC content %: 48.121 | |
| Tdicoccoides_TRIDC2AG030030.20 TRIDC2AG030030.20 |
Low | No | 1467 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -30.055 AMFE: -0.614 GC content %: 48.943 | |
| Tdicoccoides_TRIDC2AG030030.22 TRIDC2AG030030.22 |
High | No | 1806 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -29.745 AMFE: -0.654 GC content %: 45.460 | |
| Tdicoccoides_TRIDC2AG030030.23 TRIDC2AG030030.23 |
Low | No | 1177 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -27.171 AMFE: -0.655 GC content %: 41.461 | |
| Tdicoccoides_TRIDC2AG030030.24 TRIDC2AG030030.24 |
Low | No | 783 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -27.305 AMFE: -0.644 GC content %: 42.401 | |
| Tdicoccoides_TRIDC2AG030030.25 TRIDC2AG030030.25 |
Low | No | 2274 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -26.451 AMFE: -0.659 GC content %: 40.150 | |
| Tdicoccoides_TRIDC2AG030030.27 TRIDC2AG030030.27 |
Low | No | 1177 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -26.933 AMFE: -0.618 GC content %: 43.585 | |
| Tdicoccoides_TRIDC2AG030030.28 TRIDC2AG030030.28 |
High | No | 1278 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -27.426 AMFE: -0.634 GC content %: 43.271 | |
| Tdicoccoides_TRIDC2AG030030.29 TRIDC2AG030030.29 |
High | No | 1848 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -25.390 AMFE: -0.637 GC content %: 39.827 | |
| Tdicoccoides_TRIDC2AG030030.3 TRIDC2AG030030.3 |
High | No | 1692 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -30.479 AMFE: -0.631 GC content %: 48.286 | |
| Tdicoccoides_TRIDC2AG030030.4 TRIDC2AG030030.4 |
High | No | 1297 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.527 AMFE: -0.620 GC content %: 46.029 | |
| Tdicoccoides_TRIDC2AG030030.6 TRIDC2AG030030.6 |
High | No | 1813 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -29.239 AMFE: -0.621 GC content %: 47.049 | |
| Tdicoccoides_TRIDC2AG030030.7 TRIDC2AG030030.7 |
Low | No | 1665 | OG0000530 | Get ORF Coding potential... Type: noncoding Potential: -0.606 Folding energies... MFEI: -29.964 AMFE: -0.621 GC content %: 48.288 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG030030.19 | SwissProt | 2021-04-01 | Q54HR6 | 5.31e-5 |
| Tdicoccoides_TRIDC2AG030030.7 | SwissProt | 2021-04-01 | Q54HR6 | 4.33e-5 |
| Tdicoccoides_TRIDC2AG030030.20 | SwissProt | 2021-04-01 | Q54HR6 | 5.37e-5 |
| Tdicoccoides_TRIDC2AG030030.23 | SwissProt | 2021-04-01 | Q54HR6 | 3.4e-5 |
| Tdicoccoides_TRIDC2AG030030.1 | SwissProt | 2021-04-01 | Q54HR6 | 3.86e-5 |
| Tdicoccoides_TRIDC2AG030030.24 | SwissProt | 2021-04-01 | Q54HR6 | 1.42e-5 |
| Tdicoccoides_TRIDC2AG030030.11 | SwissProt | 2021-04-01 | Q54HR6 | 3.16e-5 |
| Tdicoccoides_TRIDC2AG030030.25 | SwissProt | 2021-04-01 | Q54HR6 | 9.18e-5 |
| Tdicoccoides_TRIDC2AG030030.17 | SwissProt | 2021-04-01 | Q54HR6 | 5.36e-5 |
| Tdicoccoides_TRIDC2AG030030.27 | SwissProt | 2021-04-01 | Q2HDQ7 | 4.42e-6 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
