Tdicoccoides TRIDC2AG034420
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG034420 [ TRIDC2AG034420] |
2A | 355399850 | 355403321 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG034420.1 TRIDC2AG034420.1 |
Low | No | 2199 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -27.120 AMFE: -0.606 GC content %: 44.748 | |
| Tdicoccoides_TRIDC2AG034420.10 TRIDC2AG034420.10 |
Low | No | 449 | OG0355326 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -24.566 AMFE: -0.581 GC content %: 42.316 | |
| Tdicoccoides_TRIDC2AG034420.11 TRIDC2AG034420.11 |
Low | No | 1197 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -30.869 AMFE: -0.578 GC content %: 53.383 | |
| Tdicoccoides_TRIDC2AG034420.12 TRIDC2AG034420.12 |
High | No | 1825 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -27.149 AMFE: -0.588 GC content %: 46.137 | |
| Tdicoccoides_TRIDC2AG034420.13 TRIDC2AG034420.13 |
High | No | 1151 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -30.475 AMFE: -0.572 GC content %: 53.258 | |
| Tdicoccoides_TRIDC2AG034420.14 TRIDC2AG034420.14 |
High | No | 589 | OG0355327 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -33.509 AMFE: -0.509 GC content %: 65.874 | |
| Tdicoccoides_TRIDC2AG034420.2 TRIDC2AG034420.2 |
Low | No | 1374 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -30.180 AMFE: -0.587 GC content %: 51.456 | |
| Tdicoccoides_TRIDC2AG034420.3 TRIDC2AG034420.3 |
Low | No | 2641 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -26.572 AMFE: -0.611 GC content %: 43.506 | |
| Tdicoccoides_TRIDC2AG034420.4 TRIDC2AG034420.4 |
Low | No | 887 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -29.944 AMFE: -0.672 GC content %: 44.532 | |
| Tdicoccoides_TRIDC2AG034420.5 TRIDC2AG034420.5 |
Low | No | 1849 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -28.560 AMFE: -0.598 GC content %: 47.756 | |
| Tdicoccoides_TRIDC2AG034420.6 TRIDC2AG034420.6 |
Low | No | 1411 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -29.851 AMFE: -0.585 GC content %: 51.028 | |
| Tdicoccoides_TRIDC2AG034420.7 TRIDC2AG034420.7 |
High | No | 1359 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -30.160 AMFE: -0.586 GC content %: 51.508 | |
| Tdicoccoides_TRIDC2AG034420.8 TRIDC2AG034420.8 |
Low | No | 2446 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -26.525 AMFE: -0.622 GC content %: 42.641 | |
| Tdicoccoides_TRIDC2AG034420.9 TRIDC2AG034420.9 |
Low | No | 2113 | OG0001488 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -27.156 AMFE: -0.609 GC content %: 44.581 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG034420.6 | SwissProt | 2021-04-01 | Q9SIC4 | 1.27e-5 |
| Tdicoccoides_TRIDC2AG034420.11 | SwissProt | 2021-04-01 | Q9SIC4 | 3.0e-5 |
| Tdicoccoides_TRIDC2AG034420.8 | SwissProt | 2021-04-01 | Q9SIC4 | 3.1e-4 |
| Tdicoccoides_TRIDC2AG034420.2 | SwissProt | 2021-04-01 | Q9SIC4 | 1.39e-4 |
| Tdicoccoides_TRIDC2AG034420.9 | SwissProt | 2021-04-01 | Q9SIC4 | 2.57e-4 |
| Tdicoccoides_TRIDC2AG034420.3 | SwissProt | 2021-04-01 | Q9SIC4 | 3.41e-4 |
| Tdicoccoides_TRIDC2AG034420.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/DIRS | |
| Tdicoccoides_TRIDC2AG034420.4 | SwissProt | 2021-04-01 | Q9SIC4 | 6.18e-5 |
| Tdicoccoides_TRIDC2AG034420.1 | SwissProt | 2021-04-01 | Q9SIC4 | 2.7e-4 |
| Tdicoccoides_TRIDC2AG034420.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/DIRS |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
