Tdicoccoides TRIDC2AG039400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG039400 [ TRIDC2AG039400] |
2A | 444377746 | 444384227 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG039400.12 TRIDC2AG039400.12 |
Low | No | 2325 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -27.910 AMFE: -0.647 GC content %: 43.140 | |
| Tdicoccoides_TRIDC2AG039400.13 TRIDC2AG039400.13 |
Low | No | 2038 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -26.570 AMFE: -0.668 GC content %: 39.794 | |
| Tdicoccoides_TRIDC2AG039400.14 TRIDC2AG039400.14 |
Low | No | 2125 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -26.527 AMFE: -0.666 GC content %: 39.812 | |
| Tdicoccoides_TRIDC2AG039400.15 TRIDC2AG039400.15 |
Low | No | 1941 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -26.698 AMFE: -0.665 GC content %: 40.134 | |
| Tdicoccoides_TRIDC2AG039400.16 TRIDC2AG039400.16 |
Low | No | 2021 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.685 AMFE: -0.671 GC content %: 39.782 | |
| Tdicoccoides_TRIDC2AG039400.17 TRIDC2AG039400.17 |
Low | No | 2235 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -26.488 AMFE: -0.670 GC content %: 39.508 | |
| Tdicoccoides_TRIDC2AG039400.18 TRIDC2AG039400.18 |
Low | No | 995 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -29.538 AMFE: -0.693 GC content %: 42.613 | |
| Tdicoccoides_TRIDC2AG039400.19 TRIDC2AG039400.19 |
Low | No | 2031 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -26.411 AMFE: -0.663 GC content %: 39.833 | |
| Tdicoccoides_TRIDC2AG039400.20 TRIDC2AG039400.20 |
High | No | 1990 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -26.538 AMFE: -0.683 GC content %: 38.844 | |
| Tdicoccoides_TRIDC2AG039400.21 TRIDC2AG039400.21 |
High | No | 1918 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -26.606 AMFE: -0.675 GC content %: 39.416 | |
| Tdicoccoides_TRIDC2AG039400.22 TRIDC2AG039400.22 |
High | No | 1505 | OG0001822 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -26.013 AMFE: -0.661 GC content %: 39.336 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG039400.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Tdicoccoides_TRIDC2AG039400.12 | SwissProt | 2021-04-01 | O67409 | 1.43e-13 |
| Tdicoccoides_TRIDC2AG039400.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
