GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC2AG061140 [ TRIDC2AG061140]	2A	671406761	671408334	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC2AG061140.2 TRIDC2AG061140.2	High	No	537	OG0000990		Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -28.622 AMFE: -0.617 GC content %: 46.369
Tdicoccoides_TRIDC2AG061140.3 TRIDC2AG061140.3	High	No	515	OG0000990		Get ORF Coding potential... Type: noncoding Potential: -0.532 Folding energies... MFEI: -29.165 AMFE: -0.634 GC content %: 46.019
Tdicoccoides_TRIDC2AG061140.4 TRIDC2AG061140.4	High	No	545	OG0000990		Get ORF Coding potential... Type: noncoding Potential: -0.548 Folding energies... MFEI: -29.028 AMFE: -0.613 GC content %: 47.339

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).