Tdicoccoides TRIDC2AG067380
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG067380 [ TRIDC2AG067380] |
2A | 709511570 | 709516417 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG067380.12 TRIDC2AG067380.12 |
Low | No | 1704 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -30.540 AMFE: -0.649 GC content %: 47.066 | |
| Tdicoccoides_TRIDC2AG067380.13 TRIDC2AG067380.13 |
Low | No | 1127 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -29.246 AMFE: -0.610 GC content %: 47.915 | |
| Tdicoccoides_TRIDC2AG067380.14 TRIDC2AG067380.14 |
Low | No | 1802 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -29.673 AMFE: -0.657 GC content %: 45.172 | |
| Tdicoccoides_TRIDC2AG067380.15 TRIDC2AG067380.15 |
Low | No | 1799 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -29.639 AMFE: -0.656 GC content %: 45.192 | |
| Tdicoccoides_TRIDC2AG067380.16 TRIDC2AG067380.16 |
Low | No | 1192 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -29.136 AMFE: -0.631 GC content %: 46.141 | |
| Tdicoccoides_TRIDC2AG067380.17 TRIDC2AG067380.17 |
Low | No | 1170 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -28.991 AMFE: -0.641 GC content %: 45.214 | |
| Tdicoccoides_TRIDC2AG067380.5 TRIDC2AG067380.5 |
Low | No | 2964 | OG0004487 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -30.499 AMFE: -0.681 GC content %: 44.804 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2AG067380.15 | SwissProt | 2021-04-01 | Q9SWG3 | 3.16e-4 |
| Tdicoccoides_TRIDC2AG067380.16 | SwissProt | 2021-04-01 | Q9SWG3 | 1.92e-4 |
| Tdicoccoides_TRIDC2AG067380.17 | SwissProt | 2021-04-01 | Q9SWG3 | 1.86e-4 |
| Tdicoccoides_TRIDC2AG067380.12 | SwissProt | 2021-04-01 | Q9SWG3 | 2.98e-4 |
| Tdicoccoides_TRIDC2AG067380.5 | SwissProt | 2021-04-01 | Q9SWG3 | 5.5e-4 |
| Tdicoccoides_TRIDC2AG067380.13 | SwissProt | 2021-04-01 | Q9SWG3 | 1.78e-4 |
| Tdicoccoides_TRIDC2AG067380.14 | SwissProt | 2021-04-01 | Q9SWG3 | 3.17e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
