Tdicoccoides TRIDC2BG005550
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG005550 [ TRIDC2BG005550] |
2B | 25037710 | 25041715 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG005550.1 TRIDC2BG005550.1 |
Low | No | 1982 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -30.555 AMFE: -0.674 GC content %: 45.358 | |
| Tdicoccoides_TRIDC2BG005550.10 TRIDC2BG005550.10 |
High | No | 2315 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -33.067 AMFE: -0.683 GC content %: 48.380 | |
| Tdicoccoides_TRIDC2BG005550.11 TRIDC2BG005550.11 |
Low | No | 3167 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -30.041 AMFE: -0.678 GC content %: 44.332 | |
| Tdicoccoides_TRIDC2BG005550.12 TRIDC2BG005550.12 |
High | No | 2374 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -32.595 AMFE: -0.682 GC content %: 47.810 | |
| Tdicoccoides_TRIDC2BG005550.13 TRIDC2BG005550.13 |
High | No | 2772 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -27.965 AMFE: -0.665 GC content %: 42.063 | |
| Tdicoccoides_TRIDC2BG005550.14 TRIDC2BG005550.14 |
High | No | 2797 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -27.944 AMFE: -0.665 GC content %: 42.009 | |
| Tdicoccoides_TRIDC2BG005550.15 TRIDC2BG005550.15 |
High | No | 2119 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -33.124 AMFE: -0.685 GC content %: 48.325 | |
| Tdicoccoides_TRIDC2BG005550.16 TRIDC2BG005550.16 |
Low | No | 2249 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -32.437 AMFE: -0.685 GC content %: 47.354 | |
| Tdicoccoides_TRIDC2BG005550.17 TRIDC2BG005550.17 |
High | No | 3170 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -29.492 AMFE: -0.676 GC content %: 43.628 | |
| Tdicoccoides_TRIDC2BG005550.18 TRIDC2BG005550.18 |
Low | No | 2182 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -31.494 AMFE: -0.680 GC content %: 46.334 | |
| Tdicoccoides_TRIDC2BG005550.19 TRIDC2BG005550.19 |
Low | No | 1683 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -30.547 AMFE: -0.653 GC content %: 46.762 | |
| Tdicoccoides_TRIDC2BG005550.2 TRIDC2BG005550.2 |
High | No | 1933 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -30.336 AMFE: -0.671 GC content %: 45.215 | |
| Tdicoccoides_TRIDC2BG005550.20 TRIDC2BG005550.20 |
Low | No | 2696 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -27.352 AMFE: -0.655 GC content %: 41.766 | |
| Tdicoccoides_TRIDC2BG005550.21 TRIDC2BG005550.21 |
High | No | 1880 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -30.335 AMFE: -0.666 GC content %: 45.532 | |
| Tdicoccoides_TRIDC2BG005550.22 TRIDC2BG005550.22 |
High | No | 1900 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -28.805 AMFE: -0.654 GC content %: 44.053 | |
| Tdicoccoides_TRIDC2BG005550.23 TRIDC2BG005550.23 |
High | No | 1398 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -26.423 AMFE: -0.645 GC content %: 40.987 | |
| Tdicoccoides_TRIDC2BG005550.3 TRIDC2BG005550.3 |
High | No | 2130 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -34.089 AMFE: -0.690 GC content %: 49.390 | |
| Tdicoccoides_TRIDC2BG005550.4 TRIDC2BG005550.4 |
Low | No | 3250 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -29.957 AMFE: -0.679 GC content %: 44.123 | |
| Tdicoccoides_TRIDC2BG005550.5 TRIDC2BG005550.5 |
High | No | 2398 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -32.940 AMFE: -0.687 GC content %: 47.957 | |
| Tdicoccoides_TRIDC2BG005550.6 TRIDC2BG005550.6 |
High | No | 3167 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -30.212 AMFE: -0.682 GC content %: 44.301 | |
| Tdicoccoides_TRIDC2BG005550.7 TRIDC2BG005550.7 |
High | No | 1841 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -32.265 AMFE: -0.676 GC content %: 47.746 | |
| Tdicoccoides_TRIDC2BG005550.8 TRIDC2BG005550.8 |
High | No | 2214 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -32.195 AMFE: -0.681 GC content %: 47.290 | |
| Tdicoccoides_TRIDC2BG005550.9 TRIDC2BG005550.9 |
High | No | 3154 | OG0000378 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -30.149 AMFE: -0.678 GC content %: 44.451 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG005550.18 | SwissProt | 2021-04-01 | Q0WVL7 | 4.42e-4 |
| Tdicoccoides_TRIDC2BG005550.19 | SwissProt | 2021-04-01 | Q0WVL7 | 5.02e-4 |
| Tdicoccoides_TRIDC2BG005550.20 | SwissProt | 2021-04-01 | Q0WVL7 | 1.46e-4 |
| Tdicoccoides_TRIDC2BG005550.1 | SwissProt | 2021-04-01 | Q0WVL7 | 3.45e-4 |
| Tdicoccoides_TRIDC2BG005550.4 | SwissProt | 2021-04-01 | Q0WVL7 | 6.77e-4 |
| Tdicoccoides_TRIDC2BG005550.11 | SwissProt | 2021-04-01 | Q0WVL7 | 6.26e-4 |
| Tdicoccoides_TRIDC2BG005550.16 | SwissProt | 2021-04-01 | Q0WVL7 | 4.31e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
