Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG017450 [ TRIDC2BG017450] |
2B | 113176819 | 113177526 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG017450.1 TRIDC2BG017450.1 |
Low | No | 283 | OG0022899 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -17.456 AMFE: -0.445 GC content %: 39.223 | |
Tdicoccoides_TRIDC2BG017450.2 TRIDC2BG017450.2 |
Low | No | 708 | OG0022899 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -24.972 AMFE: -0.662 GC content %: 37.712 | |
Tdicoccoides_TRIDC2BG017450.3 TRIDC2BG017450.3 |
Low | No | 457 | OG0022899 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -21.028 AMFE: -0.534 GC content %: 39.387 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG017450.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC2BG017450.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Tdicoccoides_TRIDC2BG017450.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |