GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC2BG018670 [ TRIDC2BG018670]	2B	120457928	120459974	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC2BG018670.1 TRIDC2BG018670.1	High	No	462	OG0000637		Get ORF Coding potential... Type: noncoding Potential: -0.142 Folding energies... MFEI: -32.727 AMFE: -0.602 GC content %: 54.329
Tdicoccoides_TRIDC2BG018670.2 TRIDC2BG018670.2	High	No	355	OG0000637		Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -29.549 AMFE: -0.586 GC content %: 50.423
Tdicoccoides_TRIDC2BG018670.3 TRIDC2BG018670.3	High	No	349	OG0000637		Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -28.596 AMFE: -0.567 GC content %: 50.430
Tdicoccoides_TRIDC2BG018670.4 TRIDC2BG018670.4	High	No	310	OG0000637		Get ORF Coding potential... Type: noncoding Potential: -0.565 Folding energies... MFEI: -28.935 AMFE: -0.568 GC content %: 50.968

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).