Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG022740 [ TRIDC2BG022740] |
2B | 156367876 | 156369723 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG022740.2 TRIDC2BG022740.2 |
Low | Yes | 805 | OG0000928 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -30.584 AMFE: -0.694 GC content %: 44.099 | |
Tdicoccoides_TRIDC2BG022740.3 TRIDC2BG022740.3 |
Low | Yes | 914 | OG0000928 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -27.035 AMFE: -0.694 GC content %: 38.950 | |
Tdicoccoides_TRIDC2BG022740.4 TRIDC2BG022740.4 |
Low | Yes | 753 | OG0000928 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -31.859 AMFE: -0.704 GC content %: 45.286 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG022740.2 | Rfam | 14.6 | MIR1122 | 1.4e-7 |
Tdicoccoides_TRIDC2BG022740.3 | Rfam | 14.6 | MIR1122 | 1.6e-7 |
Tdicoccoides_TRIDC2BG022740.4 | Rfam | 14.6 | MIR1122 | 1.3e-7 |
Tdicoccoides_TRIDC2BG022740.4 | SwissProt | 2021-04-01 | B7KSZ5 | 8.17e-7 |