Tdicoccoides TRIDC2BG025330
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG025330 [ TRIDC2BG025330] |
2B | 176314494 | 176317707 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG025330.1 TRIDC2BG025330.1 |
High | No | 1208 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -26.730 AMFE: -0.598 GC content %: 44.702 | |
| Tdicoccoides_TRIDC2BG025330.10 TRIDC2BG025330.10 |
High | No | 1371 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -26.353 AMFE: -0.597 GC content %: 44.128 | |
| Tdicoccoides_TRIDC2BG025330.11 TRIDC2BG025330.11 |
High | No | 1167 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -27.318 AMFE: -0.581 GC content %: 47.044 | |
| Tdicoccoides_TRIDC2BG025330.12 TRIDC2BG025330.12 |
High | No | 1841 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -25.432 AMFE: -0.614 GC content %: 41.445 | |
| Tdicoccoides_TRIDC2BG025330.13 TRIDC2BG025330.13 |
High | No | 2054 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -25.219 AMFE: -0.614 GC content %: 41.042 | |
| Tdicoccoides_TRIDC2BG025330.14 TRIDC2BG025330.14 |
High | No | 1115 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -27.919 AMFE: -0.580 GC content %: 48.161 | |
| Tdicoccoides_TRIDC2BG025330.15 TRIDC2BG025330.15 |
High | No | 879 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -24.323 AMFE: -0.581 GC content %: 41.866 | |
| Tdicoccoides_TRIDC2BG025330.16 TRIDC2BG025330.16 |
High | No | 1004 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -26.653 AMFE: -0.611 GC content %: 43.625 | |
| Tdicoccoides_TRIDC2BG025330.17 TRIDC2BG025330.17 |
High | No | 682 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -26.466 AMFE: -0.622 GC content %: 42.522 | |
| Tdicoccoides_TRIDC2BG025330.18 TRIDC2BG025330.18 |
High | No | 1648 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -25.892 AMFE: -0.567 GC content %: 45.631 | |
| Tdicoccoides_TRIDC2BG025330.19 TRIDC2BG025330.19 |
High | No | 1445 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -26.118 AMFE: -0.588 GC content %: 44.429 | |
| Tdicoccoides_TRIDC2BG025330.2 TRIDC2BG025330.2 |
High | No | 1119 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -26.899 AMFE: -0.590 GC content %: 45.576 | |
| Tdicoccoides_TRIDC2BG025330.20 TRIDC2BG025330.20 |
High | No | 1911 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -25.364 AMFE: -0.576 GC content %: 44.061 | |
| Tdicoccoides_TRIDC2BG025330.3 TRIDC2BG025330.3 |
High | No | 1061 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -27.333 AMFE: -0.587 GC content %: 46.560 | |
| Tdicoccoides_TRIDC2BG025330.4 TRIDC2BG025330.4 |
High | No | 1441 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -26.565 AMFE: -0.601 GC content %: 44.205 | |
| Tdicoccoides_TRIDC2BG025330.5 TRIDC2BG025330.5 |
High | No | 2103 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -25.644 AMFE: -0.623 GC content %: 41.179 | |
| Tdicoccoides_TRIDC2BG025330.6 TRIDC2BG025330.6 |
High | No | 1068 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -26.901 AMFE: -0.592 GC content %: 45.412 | |
| Tdicoccoides_TRIDC2BG025330.7 TRIDC2BG025330.7 |
High | No | 1226 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -26.811 AMFE: -0.587 GC content %: 45.677 | |
| Tdicoccoides_TRIDC2BG025330.8 TRIDC2BG025330.8 |
High | No | 1136 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -25.211 AMFE: -0.588 GC content %: 42.870 | |
| Tdicoccoides_TRIDC2BG025330.9 TRIDC2BG025330.9 |
High | No | 1693 | OG0000310 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -24.288 AMFE: -0.639 GC content %: 38.039 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
