Tdicoccoides TRIDC2BG035130
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG035130 [ TRIDC2BG035130] |
2B | 294068544 | 294071814 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG035130.1 TRIDC2BG035130.1 |
High | No | 2419 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -25.684 AMFE: -0.599 GC content %: 42.910 | |
| Tdicoccoides_TRIDC2BG035130.10 TRIDC2BG035130.10 |
High | No | 1516 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -26.392 AMFE: -0.656 GC content %: 40.237 | |
| Tdicoccoides_TRIDC2BG035130.11 TRIDC2BG035130.11 |
High | No | 1577 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -26.303 AMFE: -0.615 GC content %: 42.803 | |
| Tdicoccoides_TRIDC2BG035130.12 TRIDC2BG035130.12 |
High | No | 1093 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -25.974 AMFE: -0.629 GC content %: 41.263 | |
| Tdicoccoides_TRIDC2BG035130.13 TRIDC2BG035130.13 |
High | No | 354 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -26.638 AMFE: -0.431 GC content %: 61.864 | |
| Tdicoccoides_TRIDC2BG035130.2 TRIDC2BG035130.2 |
High | No | 2683 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -25.520 AMFE: -0.609 GC content %: 41.931 | |
| Tdicoccoides_TRIDC2BG035130.3 TRIDC2BG035130.3 |
High | No | 2327 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -25.694 AMFE: -0.600 GC content %: 42.845 | |
| Tdicoccoides_TRIDC2BG035130.4 TRIDC2BG035130.4 |
High | No | 2511 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -25.735 AMFE: -0.645 GC content %: 39.904 | |
| Tdicoccoides_TRIDC2BG035130.5 TRIDC2BG035130.5 |
High | No | 2386 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -26.220 AMFE: -0.600 GC content %: 43.713 | |
| Tdicoccoides_TRIDC2BG035130.6 TRIDC2BG035130.6 |
High | No | 2666 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -26.129 AMFE: -0.615 GC content %: 42.498 | |
| Tdicoccoides_TRIDC2BG035130.7 TRIDC2BG035130.7 |
High | No | 2406 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -25.677 AMFE: -0.644 GC content %: 39.859 | |
| Tdicoccoides_TRIDC2BG035130.8 TRIDC2BG035130.8 |
High | No | 1001 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -25.754 AMFE: -0.527 GC content %: 48.851 | |
| Tdicoccoides_TRIDC2BG035130.9 TRIDC2BG035130.9 |
High | No | 683 | OG0001104 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -26.120 AMFE: -0.469 GC content %: 55.637 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
