Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG038570 [ TRIDC2BG038570] |
2B | 364620269 | 364627579 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG038570.1 TRIDC2BG038570.1 |
Low | No | 817 | OG0003688 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -29.486 AMFE: -0.604 GC content %: 48.837 | |
Tdicoccoides_TRIDC2BG038570.2 TRIDC2BG038570.2 |
Low | No | 2473 | OG0006836 | Get ORF Coding potential... Type: coding Potential: 0.208 Folding energies... MFEI: -26.607 AMFE: -0.649 GC content %: 41.003 | |
Tdicoccoides_TRIDC2BG038570.3 TRIDC2BG038570.3 |
High | No | 434 | OG0024673 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -25.806 AMFE: -0.615 GC content %: 41.935 | |
Tdicoccoides_TRIDC2BG038570.4 TRIDC2BG038570.4 |
Low | No | 516 | OG0003688 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -24.632 AMFE: -0.567 GC content %: 43.411 | |
Tdicoccoides_TRIDC2BG038570.7 TRIDC2BG038570.7 |
Low | No | 388 | OG0003688 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.397 AMFE: -0.509 GC content %: 53.866 | |
Tdicoccoides_TRIDC2BG038570.8 TRIDC2BG038570.8 |
Low | No | 1165 | OG0356605 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -28.824 AMFE: -0.648 GC content %: 44.464 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG038570.1 | SwissProt | 2021-04-01 | Q3SZE2 | 6.96e-9 |
Tdicoccoides_TRIDC2BG038570.4 | SwissProt | 2021-04-01 | Q3SZE2 | 4.11e-9 |
Tdicoccoides_TRIDC2BG038570.7 | SwissProt | 2021-04-01 | Q3SZE2 | 2.26e-5 |
Tdicoccoides_TRIDC2BG038570.8 | SwissProt | 2021-04-01 | Q3SZE2 | 1.03e-4 |