Tdicoccoides TRIDC2BG042620
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG042620 [ TRIDC2BG042620] |
2B | 407768059 | 407772575 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG042620.10 TRIDC2BG042620.10 |
Low | No | 3000 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -26.290 AMFE: -0.681 GC content %: 38.600 | |
| Tdicoccoides_TRIDC2BG042620.11 TRIDC2BG042620.11 |
Low | No | 1445 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -26.083 AMFE: -0.699 GC content %: 37.301 | |
| Tdicoccoides_TRIDC2BG042620.14 TRIDC2BG042620.14 |
Low | No | 3251 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -27.588 AMFE: -0.661 GC content %: 41.710 | |
| Tdicoccoides_TRIDC2BG042620.15 TRIDC2BG042620.15 |
Low | No | 3340 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -27.698 AMFE: -0.666 GC content %: 41.557 | |
| Tdicoccoides_TRIDC2BG042620.16 TRIDC2BG042620.16 |
Low | No | 3210 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -27.237 AMFE: -0.655 GC content %: 41.589 | |
| Tdicoccoides_TRIDC2BG042620.3 TRIDC2BG042620.3 |
High | No | 390 | OG0356646 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -26.538 AMFE: -0.609 GC content %: 43.590 | |
| Tdicoccoides_TRIDC2BG042620.32 TRIDC2BG042620.32 |
Low | No | 2070 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -26.092 AMFE: -0.659 GC content %: 39.565 | |
| Tdicoccoides_TRIDC2BG042620.4 TRIDC2BG042620.4 |
Low | No | 2216 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.294 AMFE: -0.637 GC content %: 44.449 | |
| Tdicoccoides_TRIDC2BG042620.40 TRIDC2BG042620.40 |
Low | No | 2644 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.162 AMFE: -0.651 GC content %: 43.230 | |
| Tdicoccoides_TRIDC2BG042620.41 TRIDC2BG042620.41 |
Low | No | 2905 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.859 AMFE: -0.669 GC content %: 41.618 | |
| Tdicoccoides_TRIDC2BG042620.42 TRIDC2BG042620.42 |
Low | No | 2581 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -27.850 AMFE: -0.655 GC content %: 42.542 | |
| Tdicoccoides_TRIDC2BG042620.43 TRIDC2BG042620.43 |
High | No | 1752 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -29.035 AMFE: -0.658 GC content %: 44.121 | |
| Tdicoccoides_TRIDC2BG042620.5 TRIDC2BG042620.5 |
Low | No | 2285 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.206 AMFE: -0.647 GC content %: 43.589 | |
| Tdicoccoides_TRIDC2BG042620.6 TRIDC2BG042620.6 |
Low | No | 2250 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.049 AMFE: -0.642 GC content %: 43.689 | |
| Tdicoccoides_TRIDC2BG042620.7 TRIDC2BG042620.7 |
Low | No | 1998 | OG0001107 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -27.077 AMFE: -0.661 GC content %: 40.941 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG042620.41 | SwissProt | 2021-04-01 | O22714 | 1.77e-4 |
| Tdicoccoides_TRIDC2BG042620.15 | SwissProt | 2021-04-01 | O22714 | 2.09e-4 |
| Tdicoccoides_TRIDC2BG042620.42 | SwissProt | 2021-04-01 | O22714 | 1.52e-4 |
| Tdicoccoides_TRIDC2BG042620.16 | SwissProt | 2021-04-01 | O22714 | 1.99e-4 |
| Tdicoccoides_TRIDC2BG042620.5 | SwissProt | 2021-04-01 | O22714 | 1.3e-4 |
| Tdicoccoides_TRIDC2BG042620.32 | SwissProt | 2021-04-01 | O22714 | 1.14e-4 |
| Tdicoccoides_TRIDC2BG042620.10 | SwissProt | 2021-04-01 | O22714 | 1.84e-4 |
| Tdicoccoides_TRIDC2BG042620.6 | SwissProt | 2021-04-01 | O22714 | 1.28e-4 |
| Tdicoccoides_TRIDC2BG042620.4 | SwissProt | 2021-04-01 | O22714 | 1.25e-4 |
| Tdicoccoides_TRIDC2BG042620.11 | SwissProt | 2021-04-01 | O22714 | 6.76e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
