Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG043520 [ TRIDC2BG043520] |
2B | 418154451 | 418158219 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG043520.5 TRIDC2BG043520.5 |
Low | No | 782 | OG0015229 | Get ORF Coding potential... Type: noncoding Potential: -0.526 Folding energies... MFEI: -31.982 AMFE: -0.703 GC content %: 45.524 | |
Tdicoccoides_TRIDC2BG043520.6 TRIDC2BG043520.6 |
Low | No | 945 | OG0015229 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -28.476 AMFE: -0.648 GC content %: 43.915 | |
Tdicoccoides_TRIDC2BG043520.7 TRIDC2BG043520.7 |
Low | No | 980 | OG0015229 | Get ORF Coding potential... Type: noncoding Potential: -0.545 Folding energies... MFEI: -30.296 AMFE: -0.695 GC content %: 43.571 | |
Tdicoccoides_TRIDC2BG043520.9 TRIDC2BG043520.9 |
Low | No | 797 | OG0015229 | Get ORF Coding potential... Type: noncoding Potential: -0.512 Folding energies... MFEI: -31.543 AMFE: -0.702 GC content %: 44.918 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG043520.7 | SwissProt | 2021-04-01 | Q495M9 | 3.92e-6 |
Tdicoccoides_TRIDC2BG043520.9 | SwissProt | 2021-04-01 | Q495M9 | 1.72e-6 |
Tdicoccoides_TRIDC2BG043520.5 | SwissProt | 2021-04-01 | Q495M9 | 1.57e-6 |
Tdicoccoides_TRIDC2BG043520.6 | SwissProt | 2021-04-01 | Q495M9 | 4.21e-6 |