Tdicoccoides TRIDC2BG045560
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG045560 [ TRIDC2BG045560] |
2B | 443989644 | 443997006 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG045560.1 TRIDC2BG045560.1 |
Low | No | 3506 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -28.679 AMFE: -0.678 GC content %: 42.270 | |
| Tdicoccoides_TRIDC2BG045560.10 TRIDC2BG045560.10 |
Low | No | 3678 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -27.452 AMFE: -0.676 GC content %: 40.620 | |
| Tdicoccoides_TRIDC2BG045560.11 TRIDC2BG045560.11 |
Low | No | 3676 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -27.364 AMFE: -0.674 GC content %: 40.615 | |
| Tdicoccoides_TRIDC2BG045560.12 TRIDC2BG045560.12 |
Low | No | 3182 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -26.530 AMFE: -0.676 GC content %: 39.252 | |
| Tdicoccoides_TRIDC2BG045560.13 TRIDC2BG045560.13 |
Low | No | 3034 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.883 AMFE: -0.677 GC content %: 38.233 | |
| Tdicoccoides_TRIDC2BG045560.14 TRIDC2BG045560.14 |
Low | No | 3436 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -26.935 AMFE: -0.666 GC content %: 40.454 | |
| Tdicoccoides_TRIDC2BG045560.15 TRIDC2BG045560.15 |
Low | No | 3455 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -27.027 AMFE: -0.668 GC content %: 40.463 | |
| Tdicoccoides_TRIDC2BG045560.16 TRIDC2BG045560.16 |
Low | No | 3538 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -25.893 AMFE: -0.657 GC content %: 39.401 | |
| Tdicoccoides_TRIDC2BG045560.17 TRIDC2BG045560.17 |
Low | No | 3469 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -26.924 AMFE: -0.672 GC content %: 40.069 | |
| Tdicoccoides_TRIDC2BG045560.18 TRIDC2BG045560.18 |
Low | No | 2087 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.358 AMFE: -0.685 GC content %: 42.885 | |
| Tdicoccoides_TRIDC2BG045560.19 TRIDC2BG045560.19 |
Low | No | 2160 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -29.278 AMFE: -0.684 GC content %: 42.778 | |
| Tdicoccoides_TRIDC2BG045560.20 TRIDC2BG045560.20 |
Low | No | 3419 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -26.853 AMFE: -0.674 GC content %: 39.836 | |
| Tdicoccoides_TRIDC2BG045560.21 TRIDC2BG045560.21 |
Low | No | 2056 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -29.275 AMFE: -0.693 GC content %: 42.267 | |
| Tdicoccoides_TRIDC2BG045560.22 TRIDC2BG045560.22 |
Low | No | 2915 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -25.887 AMFE: -0.680 GC content %: 38.045 | |
| Tdicoccoides_TRIDC2BG045560.23 TRIDC2BG045560.23 |
Low | No | 2797 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -24.630 AMFE: -0.667 GC content %: 36.932 | |
| Tdicoccoides_TRIDC2BG045560.24 TRIDC2BG045560.24 |
Low | No | 1929 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -26.480 AMFE: -0.666 GC content %: 39.762 | |
| Tdicoccoides_TRIDC2BG045560.25 TRIDC2BG045560.25 |
High | No | 611 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -29.198 AMFE: -0.668 GC content %: 43.699 | |
| Tdicoccoides_TRIDC2BG045560.7 TRIDC2BG045560.7 |
Low | No | 3124 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -27.423 AMFE: -0.684 GC content %: 40.109 | |
| Tdicoccoides_TRIDC2BG045560.8 TRIDC2BG045560.8 |
Low | No | 3197 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -26.897 AMFE: -0.679 GC content %: 39.600 | |
| Tdicoccoides_TRIDC2BG045560.9 TRIDC2BG045560.9 |
Low | No | 3128 | OG0000436 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -25.908 AMFE: -0.649 GC content %: 39.898 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG045560.23 | SwissProt | 2021-04-01 | Q8VZL6 | 7.43e-6 |
| Tdicoccoides_TRIDC2BG045560.22 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC2BG045560.18 | SwissProt | 2021-04-01 | Q8VZL6 | 4.77e-7 |
| Tdicoccoides_TRIDC2BG045560.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC2BG045560.13 | SwissProt | 2021-04-01 | Q8VZL6 | 1.22e-7 |
| Tdicoccoides_TRIDC2BG045560.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC2BG045560.7 | SwissProt | 2021-04-01 | Q8VZL6 | 1.2e-6 |
| Tdicoccoides_TRIDC2BG045560.23 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC2BG045560.19 | SwissProt | 2021-04-01 | Q8VZL6 | 5.01e-7 |
| Tdicoccoides_TRIDC2BG045560.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
