GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC2BG051940 [ TRIDC2BG051940]	2B	509353870	509430069	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC2BG051940.1 TRIDC2BG051940.1	High	No	727	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -29.629 AMFE: -0.639 GC content %: 46.355
Tdicoccoides_TRIDC2BG051940.10 TRIDC2BG051940.10	High	No	377	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -26.870 AMFE: -0.641 GC content %: 41.910
Tdicoccoides_TRIDC2BG051940.6 TRIDC2BG051940.6	High	No	673	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -28.588 AMFE: -0.629 GC content %: 45.468
Tdicoccoides_TRIDC2BG051940.7 TRIDC2BG051940.7	Low	No	771	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -28.911 AMFE: -0.637 GC content %: 45.396
Tdicoccoides_TRIDC2BG051940.8 TRIDC2BG051940.8	High	No	500	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.640 AMFE: -0.625 GC content %: 42.600
Tdicoccoides_TRIDC2BG051940.9 TRIDC2BG051940.9	High	No	601	OG0001826		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -24.526 AMFE: -0.655 GC content %: 37.438

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC2BG051940.7	SwissProt	2021-04-01	P27347	2.36e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).