Tdicoccoides TRIDC2BG054870
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG054870 [ TRIDC2BG054870] |
2B | 535734013 | 535738411 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG054870.10 TRIDC2BG054870.10 |
High | No | 941 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -28.863 AMFE: -0.633 GC content %: 45.590 | |
| Tdicoccoides_TRIDC2BG054870.12 TRIDC2BG054870.12 |
Low | No | 1094 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -29.186 AMFE: -0.634 GC content %: 46.069 | |
| Tdicoccoides_TRIDC2BG054870.13 TRIDC2BG054870.13 |
Low | No | 911 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -29.045 AMFE: -0.629 GC content %: 46.213 | |
| Tdicoccoides_TRIDC2BG054870.14 TRIDC2BG054870.14 |
Low | No | 1052 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -29.087 AMFE: -0.640 GC content %: 45.437 | |
| Tdicoccoides_TRIDC2BG054870.15 TRIDC2BG054870.15 |
Low | No | 1424 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -25.955 AMFE: -0.629 GC content %: 41.292 | |
| Tdicoccoides_TRIDC2BG054870.16 TRIDC2BG054870.16 |
Low | No | 1026 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -28.382 AMFE: -0.646 GC content %: 43.957 | |
| Tdicoccoides_TRIDC2BG054870.17 TRIDC2BG054870.17 |
Low | No | 908 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -26.696 AMFE: -0.622 GC content %: 42.952 | |
| Tdicoccoides_TRIDC2BG054870.18 TRIDC2BG054870.18 |
Low | No | 848 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -26.132 AMFE: -0.609 GC content %: 42.925 | |
| Tdicoccoides_TRIDC2BG054870.3 TRIDC2BG054870.3 |
Low | No | 543 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -32.910 AMFE: -0.588 GC content %: 55.985 | |
| Tdicoccoides_TRIDC2BG054870.4 TRIDC2BG054870.4 |
Low | No | 670 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -32.328 AMFE: -0.590 GC content %: 54.776 | |
| Tdicoccoides_TRIDC2BG054870.5 TRIDC2BG054870.5 |
Low | No | 658 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -31.733 AMFE: -0.583 GC content %: 54.407 | |
| Tdicoccoides_TRIDC2BG054870.6 TRIDC2BG054870.6 |
Low | No | 1080 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -29.417 AMFE: -0.634 GC content %: 46.389 | |
| Tdicoccoides_TRIDC2BG054870.7 TRIDC2BG054870.7 |
Low | No | 1052 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -29.363 AMFE: -0.640 GC content %: 45.913 | |
| Tdicoccoides_TRIDC2BG054870.8 TRIDC2BG054870.8 |
Low | No | 951 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.685 AMFE: -0.627 GC content %: 47.319 | |
| Tdicoccoides_TRIDC2BG054870.9 TRIDC2BG054870.9 |
Low | No | 955 | OG0000953 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -29.550 AMFE: -0.626 GC content %: 47.225 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG054870.14 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.3 | SwissProt | 2021-04-01 | Q6K9X3 | 7.58e-10 |
| Tdicoccoides_TRIDC2BG054870.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.15 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.4 | SwissProt | 2021-04-01 | Q6K9X3 | 1.76e-9 |
| Tdicoccoides_TRIDC2BG054870.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.16 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.5 | SwissProt | 2021-04-01 | Q6K9X3 | 5.33e-9 |
| Tdicoccoides_TRIDC2BG054870.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 | |
| Tdicoccoides_TRIDC2BG054870.17 | RepBase (RepeatMasker) | 2014-01-31 | LINE/Tad1 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
