Tdicoccoides TRIDC2BG055550
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG055550 [ TRIDC2BG055550] |
2B | 544277305 | 544280092 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG055550.11 TRIDC2BG055550.11 |
Low | No | 1381 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -25.453 AMFE: -0.671 GC content %: 37.944 | |
| Tdicoccoides_TRIDC2BG055550.13 TRIDC2BG055550.13 |
Low | No | 1068 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -26.199 AMFE: -0.661 GC content %: 39.607 | |
| Tdicoccoides_TRIDC2BG055550.14 TRIDC2BG055550.14 |
Low | No | 1158 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -25.717 AMFE: -0.666 GC content %: 38.601 | |
| Tdicoccoides_TRIDC2BG055550.15 TRIDC2BG055550.15 |
Low | No | 877 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -26.249 AMFE: -0.643 GC content %: 40.821 | |
| Tdicoccoides_TRIDC2BG055550.16 TRIDC2BG055550.16 |
Low | No | 1160 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.345 AMFE: -0.663 GC content %: 39.741 | |
| Tdicoccoides_TRIDC2BG055550.17 TRIDC2BG055550.17 |
Low | No | 831 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.498 AMFE: -0.640 GC content %: 41.396 | |
| Tdicoccoides_TRIDC2BG055550.18 TRIDC2BG055550.18 |
Low | No | 922 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -26.649 AMFE: -0.650 GC content %: 40.998 | |
| Tdicoccoides_TRIDC2BG055550.19 TRIDC2BG055550.19 |
Low | No | 828 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.268 AMFE: -0.634 GC content %: 41.425 | |
| Tdicoccoides_TRIDC2BG055550.21 TRIDC2BG055550.21 |
Low | No | 1399 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -25.490 AMFE: -0.673 GC content %: 37.884 | |
| Tdicoccoides_TRIDC2BG055550.22 TRIDC2BG055550.22 |
Low | No | 924 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -26.591 AMFE: -0.650 GC content %: 40.909 | |
| Tdicoccoides_TRIDC2BG055550.25 TRIDC2BG055550.25 |
Low | No | 872 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -25.401 AMFE: -0.673 GC content %: 37.729 | |
| Tdicoccoides_TRIDC2BG055550.26 TRIDC2BG055550.26 |
Low | No | 1243 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -25.382 AMFE: -0.674 GC content %: 37.651 | |
| Tdicoccoides_TRIDC2BG055550.28 TRIDC2BG055550.28 |
Low | No | 1318 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -25.599 AMFE: -0.678 GC content %: 37.785 | |
| Tdicoccoides_TRIDC2BG055550.3 TRIDC2BG055550.3 |
Low | No | 1321 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -25.276 AMFE: -0.668 GC content %: 37.850 | |
| Tdicoccoides_TRIDC2BG055550.30 TRIDC2BG055550.30 |
Low | No | 680 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -25.706 AMFE: -0.631 GC content %: 40.735 | |
| Tdicoccoides_TRIDC2BG055550.4 TRIDC2BG055550.4 |
Low | No | 1263 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -25.851 AMFE: -0.679 GC content %: 38.084 | |
| Tdicoccoides_TRIDC2BG055550.7 TRIDC2BG055550.7 |
Low | No | 1029 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -27.036 AMFE: -0.680 GC content %: 39.747 | |
| Tdicoccoides_TRIDC2BG055550.8 TRIDC2BG055550.8 |
Low | No | 1205 | OG0000152 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -25.983 AMFE: -0.676 GC content %: 38.423 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG055550.4 | SwissProt | 2021-04-01 | Q9FLR5 | 6.41e-10 |
| Tdicoccoides_TRIDC2BG055550.25 | SwissProt | 2021-04-01 | Q9FLR5 | 1.82e-10 |
| Tdicoccoides_TRIDC2BG055550.17 | SwissProt | 2021-04-01 | Q9FLR5 | 1.51e-10 |
| Tdicoccoides_TRIDC2BG055550.11 | SwissProt | 2021-04-01 | Q9FLR5 | 7.99e-10 |
| Tdicoccoides_TRIDC2BG055550.7 | SwissProt | 2021-04-01 | Q9FLR5 | 3.45e-10 |
| Tdicoccoides_TRIDC2BG055550.26 | SwissProt | 2021-04-01 | Q9FLR5 | 6.09e-10 |
| Tdicoccoides_TRIDC2BG055550.18 | SwissProt | 2021-04-01 | Q9FLR5 | 2.29e-10 |
| Tdicoccoides_TRIDC2BG055550.13 | SwissProt | 2021-04-01 | Q9FLR5 | 2.5e-10 |
| Tdicoccoides_TRIDC2BG055550.8 | SwissProt | 2021-04-01 | Q9FLR5 | 5.62e-10 |
| Tdicoccoides_TRIDC2BG055550.28 | SwissProt | 2021-04-01 | Q9FLR5 | 7.14e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
