GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC2BG059570 [ TRIDC2BG059570]	2B	582358321	582367112	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC2BG059570.10 TRIDC2BG059570.10	High	No	544	OG0061606		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -27.941 AMFE: -0.636 GC content %: 43.934
Tdicoccoides_TRIDC2BG059570.21 TRIDC2BG059570.21	High	No	1799	OG0009387		Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -28.310 AMFE: -0.637 GC content %: 44.414
Tdicoccoides_TRIDC2BG059570.22 TRIDC2BG059570.22	High	No	2607	OG0009387		Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -27.840 AMFE: -0.649 GC content %: 42.885
Tdicoccoides_TRIDC2BG059570.26 TRIDC2BG059570.26	High	No	1633	OG0009387		Get ORF Coding potential... Type: noncoding Potential: -0.507 Folding energies... MFEI: -28.720 AMFE: -0.646 GC content %: 44.458
Tdicoccoides_TRIDC2BG059570.27 TRIDC2BG059570.27	High	No	1649	OG0009387		Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -28.096 AMFE: -0.639 GC content %: 43.966
Tdicoccoides_TRIDC2BG059570.3 TRIDC2BG059570.3	Low	No	1445	OG0061606		Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -26.159 AMFE: -0.657 GC content %: 39.792
Tdicoccoides_TRIDC2BG059570.31 TRIDC2BG059570.31	High	No	1060	OG0009387		Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -27.519 AMFE: -0.634 GC content %: 43.396

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC2BG059570.3	SwissProt	2021-04-01	Q54YW1	1.69e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).