Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG068910 [ TRIDC2BG068910] |
2B | 666898264 | 666905684 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG068910.1 TRIDC2BG068910.1 |
Low | No | 1160 | OG0009390 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.503 AMFE: -0.676 GC content %: 42.155 | |
Tdicoccoides_TRIDC2BG068910.3 TRIDC2BG068910.3 |
Low | No | 853 | OG0009390 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -29.977 AMFE: -0.649 GC content %: 46.190 | |
Tdicoccoides_TRIDC2BG068910.4 TRIDC2BG068910.4 |
Low | No | 882 | OG0009390 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.612 AMFE: -0.659 GC content %: 46.485 | |
Tdicoccoides_TRIDC2BG068910.5 TRIDC2BG068910.5 |
Low | No | 663 | OG0009390 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -28.311 AMFE: -0.654 GC content %: 43.288 | |
Tdicoccoides_TRIDC2BG068910.6 TRIDC2BG068910.6 |
High | No | 368 | OG0009390 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -30.489 AMFE: -0.613 GC content %: 49.728 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG068910.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC2BG068910.3 | SwissProt | 2021-04-01 | Q8W4E2 | 2.34e-6 |
Tdicoccoides_TRIDC2BG068910.4 | SwissProt | 2021-04-01 | Q8W4E2 | 2.55e-6 |
Tdicoccoides_TRIDC2BG068910.5 | SwissProt | 2021-04-01 | Q8W4E2 | 1.04e-6 |
Tdicoccoides_TRIDC2BG068910.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC2BG068910.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Tdicoccoides_TRIDC2BG068910.1 | SwissProt | 2021-04-01 | Q8W4E2 | 4.84e-6 |