Tdicoccoides TRIDC2BG076490
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG076490 [ TRIDC2BG076490] |
2B | 722602877 | 722619283 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG076490.1 TRIDC2BG076490.1 |
Low | No | 1504 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -30.718 AMFE: -0.659 GC content %: 46.609 | |
| Tdicoccoides_TRIDC2BG076490.10 TRIDC2BG076490.10 |
Low | No | 1888 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -29.221 AMFE: -0.650 GC content %: 44.968 | |
| Tdicoccoides_TRIDC2BG076490.11 TRIDC2BG076490.11 |
Low | No | 2258 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.122 AMFE: -0.658 GC content %: 42.737 | |
| Tdicoccoides_TRIDC2BG076490.12 TRIDC2BG076490.12 |
Low | No | 2209 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -28.615 AMFE: -0.664 GC content %: 43.096 | |
| Tdicoccoides_TRIDC2BG076490.13 TRIDC2BG076490.13 |
Low | No | 1896 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -29.404 AMFE: -0.678 GC content %: 43.354 | |
| Tdicoccoides_TRIDC2BG076490.14 TRIDC2BG076490.14 |
Low | No | 1781 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -28.911 AMFE: -0.648 GC content %: 44.582 | |
| Tdicoccoides_TRIDC2BG076490.15 TRIDC2BG076490.15 |
Low | No | 1646 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -28.663 AMFE: -0.651 GC content %: 44.046 | |
| Tdicoccoides_TRIDC2BG076490.16 TRIDC2BG076490.16 |
Low | No | 2012 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -26.670 AMFE: -0.654 GC content %: 40.755 | |
| Tdicoccoides_TRIDC2BG076490.17 TRIDC2BG076490.17 |
Low | No | 1852 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -28.089 AMFE: -0.658 GC content %: 42.657 | |
| Tdicoccoides_TRIDC2BG076490.18 TRIDC2BG076490.18 |
Low | No | 1472 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -29.382 AMFE: -0.656 GC content %: 44.769 | |
| Tdicoccoides_TRIDC2BG076490.19 TRIDC2BG076490.19 |
High | No | 1686 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -25.676 AMFE: -0.618 GC content %: 41.518 | |
| Tdicoccoides_TRIDC2BG076490.2 TRIDC2BG076490.2 |
Low | No | 1700 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -30.524 AMFE: -0.662 GC content %: 46.118 | |
| Tdicoccoides_TRIDC2BG076490.20 TRIDC2BG076490.20 |
High | No | 1775 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -25.707 AMFE: -0.644 GC content %: 39.887 | |
| Tdicoccoides_TRIDC2BG076490.21 TRIDC2BG076490.21 |
High | No | 1625 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -25.637 AMFE: -0.637 GC content %: 40.246 | |
| Tdicoccoides_TRIDC2BG076490.22 TRIDC2BG076490.22 |
High | No | 1717 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -24.624 AMFE: -0.644 GC content %: 38.264 | |
| Tdicoccoides_TRIDC2BG076490.23 TRIDC2BG076490.23 |
High | No | 1151 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -25.109 AMFE: -0.622 GC content %: 40.400 | |
| Tdicoccoides_TRIDC2BG076490.24 TRIDC2BG076490.24 |
High | No | 1490 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -25.094 AMFE: -0.628 GC content %: 39.933 | |
| Tdicoccoides_TRIDC2BG076490.25 TRIDC2BG076490.25 |
High | No | 1861 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -23.482 AMFE: -0.627 GC content %: 37.453 | |
| Tdicoccoides_TRIDC2BG076490.26 TRIDC2BG076490.26 |
High | No | 1351 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -23.982 AMFE: -0.610 GC content %: 39.304 | |
| Tdicoccoides_TRIDC2BG076490.27 TRIDC2BG076490.27 |
High | No | 775 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -24.297 AMFE: -0.607 GC content %: 40.000 | |
| Tdicoccoides_TRIDC2BG076490.28 TRIDC2BG076490.28 |
High | No | 1528 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -25.707 AMFE: -0.654 GC content %: 39.332 | |
| Tdicoccoides_TRIDC2BG076490.3 TRIDC2BG076490.3 |
Low | No | 1263 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -30.847 AMFE: -0.654 GC content %: 47.189 | |
| Tdicoccoides_TRIDC2BG076490.4 TRIDC2BG076490.4 |
Low | No | 1655 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -29.879 AMFE: -0.655 GC content %: 45.619 | |
| Tdicoccoides_TRIDC2BG076490.5 TRIDC2BG076490.5 |
Low | No | 1936 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -29.075 AMFE: -0.665 GC content %: 43.698 | |
| Tdicoccoides_TRIDC2BG076490.6 TRIDC2BG076490.6 |
Low | No | 1645 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -29.726 AMFE: -0.651 GC content %: 45.653 | |
| Tdicoccoides_TRIDC2BG076490.7 TRIDC2BG076490.7 |
Low | No | 2255 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.381 AMFE: -0.663 GC content %: 42.838 | |
| Tdicoccoides_TRIDC2BG076490.8 TRIDC2BG076490.8 |
Low | No | 1673 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.665 AMFE: -0.651 GC content %: 45.547 | |
| Tdicoccoides_TRIDC2BG076490.9 TRIDC2BG076490.9 |
Low | No | 1818 | OG0000233 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -29.191 AMFE: -0.650 GC content %: 44.939 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG076490.9 | SwissProt | 2021-04-01 | A2YQK9 | 9.82e-5 |
| Tdicoccoides_TRIDC2BG076490.10 | SwissProt | 2021-04-01 | A2YQK9 | 1.03e-4 |
| Tdicoccoides_TRIDC2BG076490.4 | SwissProt | 2021-04-01 | A2YQK9 | 8.71e-5 |
| Tdicoccoides_TRIDC2BG076490.16 | SwissProt | 2021-04-01 | A2YQK9 | 1.11e-4 |
| Tdicoccoides_TRIDC2BG076490.11 | SwissProt | 2021-04-01 | A2YQK9 | 1.28e-4 |
| Tdicoccoides_TRIDC2BG076490.5 | SwissProt | 2021-04-01 | A2YQK9 | 1.06e-4 |
| Tdicoccoides_TRIDC2BG076490.17 | SwissProt | 2021-04-01 | A2YQK9 | 1.0e-4 |
| Tdicoccoides_TRIDC2BG076490.12 | SwissProt | 2021-04-01 | A2YQK9 | 1.25e-4 |
| Tdicoccoides_TRIDC2BG076490.6 | SwissProt | 2021-04-01 | A2YQK9 | 8.65e-5 |
| Tdicoccoides_TRIDC2BG076490.18 | SwissProt | 2021-04-01 | A2YQK9 | 7.46e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
