Tdicoccoides TRIDC2BG083130
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG083130 [ TRIDC2BG083130] |
2B | 763126362 | 763138425 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG083130.1 TRIDC2BG083130.1 |
High | No | 609 | OG0357264 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -22.167 AMFE: -0.592 GC content %: 37.438 | |
| Tdicoccoides_TRIDC2BG083130.10 TRIDC2BG083130.10 |
Low | No | 3530 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -28.530 AMFE: -0.656 GC content %: 43.513 | |
| Tdicoccoides_TRIDC2BG083130.11 TRIDC2BG083130.11 |
Low | No | 1822 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -30.176 AMFE: -0.652 GC content %: 46.268 | |
| Tdicoccoides_TRIDC2BG083130.12 TRIDC2BG083130.12 |
Low | No | 1262 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -32.552 AMFE: -0.648 GC content %: 50.238 | |
| Tdicoccoides_TRIDC2BG083130.14 TRIDC2BG083130.14 |
High | No | 302 | OG0009378 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -27.384 AMFE: -0.578 GC content %: 47.351 | |
| Tdicoccoides_TRIDC2BG083130.15 TRIDC2BG083130.15 |
High | No | 282 | OG0009378 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -27.305 AMFE: -0.611 GC content %: 44.681 | |
| Tdicoccoides_TRIDC2BG083130.17 TRIDC2BG083130.17 |
High | No | 1109 | OG0006605 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -24.689 AMFE: -0.604 GC content %: 40.848 | |
| Tdicoccoides_TRIDC2BG083130.18 TRIDC2BG083130.18 |
High | No | 1131 | OG0006605 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -27.993 AMFE: -0.605 GC content %: 46.242 | |
| Tdicoccoides_TRIDC2BG083130.19 TRIDC2BG083130.19 |
High | No | 986 | OG0006605 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -26.085 AMFE: -0.612 GC content %: 42.596 | |
| Tdicoccoides_TRIDC2BG083130.20 TRIDC2BG083130.20 |
High | No | 998 | OG0006605 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -24.349 AMFE: -0.608 GC content %: 40.080 | |
| Tdicoccoides_TRIDC2BG083130.3 TRIDC2BG083130.3 |
Low | No | 4574 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -28.218 AMFE: -0.654 GC content %: 43.179 | |
| Tdicoccoides_TRIDC2BG083130.4 TRIDC2BG083130.4 |
Low | No | 3951 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.879 AMFE: -0.645 GC content %: 43.255 | |
| Tdicoccoides_TRIDC2BG083130.5 TRIDC2BG083130.5 |
Low | No | 3790 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.480 AMFE: -0.642 GC content %: 44.354 | |
| Tdicoccoides_TRIDC2BG083130.6 TRIDC2BG083130.6 |
Low | No | 2498 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -28.411 AMFE: -0.652 GC content %: 43.595 | |
| Tdicoccoides_TRIDC2BG083130.7 TRIDC2BG083130.7 |
Low | No | 3980 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -28.000 AMFE: -0.648 GC content %: 43.216 | |
| Tdicoccoides_TRIDC2BG083130.8 TRIDC2BG083130.8 |
Low | No | 3583 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -28.144 AMFE: -0.635 GC content %: 44.348 | |
| Tdicoccoides_TRIDC2BG083130.9 TRIDC2BG083130.9 |
Low | No | 3358 | OG0001828 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -28.380 AMFE: -0.652 GC content %: 43.508 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC2BG083130.3 | SwissProt | 2021-04-01 | C4R7Z3 | 8.58e-5 |
| Tdicoccoides_TRIDC2BG083130.9 | SwissProt | 2021-04-01 | C4R7Z3 | 5.98e-5 |
| Tdicoccoides_TRIDC2BG083130.4 | SwissProt | 2021-04-01 | C4R7Z3 | 7.24e-5 |
| Tdicoccoides_TRIDC2BG083130.5 | SwissProt | 2021-04-01 | O53732 | 1.96e-6 |
| Tdicoccoides_TRIDC2BG083130.10 | SwissProt | 2021-04-01 | C4R7Z3 | 6.34e-5 |
| Tdicoccoides_TRIDC2BG083130.6 | SwissProt | 2021-04-01 | Q5APD4 | 4.87e-15 |
| Tdicoccoides_TRIDC2BG083130.11 | SwissProt | 2021-04-01 | P31049 | 3.67e-9 |
| Tdicoccoides_TRIDC2BG083130.7 | SwissProt | 2021-04-01 | C4R7Z3 | 7.31e-5 |
| Tdicoccoides_TRIDC2BG083130.12 | SwissProt | 2021-04-01 | Q5APD4 | 3.03e-8 |
| Tdicoccoides_TRIDC2BG083130.8 | SwissProt | 2021-04-01 | C4R7Z3 | 6.46e-5 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
