Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG085220 [ TRIDC2BG085220] |
2B | 774622599 | 774629111 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC2BG085220.1 TRIDC2BG085220.1 |
Low | No | 1559 | OG0022947 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -37.486 AMFE: -0.692 GC content %: 54.201 | |
Tdicoccoides_TRIDC2BG085220.4 TRIDC2BG085220.4 |
Low | No | 1248 | OG0022947 | Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -36.659 AMFE: -0.691 GC content %: 53.045 | |
Tdicoccoides_TRIDC2BG085220.7 TRIDC2BG085220.7 |
Low | No | 1491 | OG0022947 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -29.021 AMFE: -0.674 GC content %: 43.058 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC2BG085220.1 | SwissProt | 2021-04-01 | Q47RU8 | 5.26e-9 |
Tdicoccoides_TRIDC2BG085220.4 | SwissProt | 2021-04-01 | Q97I48 | 9.24e-7 |
Tdicoccoides_TRIDC2BG085220.7 | SwissProt | 2021-04-01 | Q8A2U2 | 3.88e-7 |