GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC3AG001620 [ TRIDC3AG001620]	3A	5653823	5659029	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC3AG001620.19 TRIDC3AG001620.19	High	No	1124	OG0022952		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -29.635 AMFE: -0.637 GC content %: 46.530
Tdicoccoides_TRIDC3AG001620.20 TRIDC3AG001620.20	High	No	745	OG0022952		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -29.651 AMFE: -0.610 GC content %: 48.591
Tdicoccoides_TRIDC3AG001620.21 TRIDC3AG001620.21	High	No	738	OG0022952		Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -28.442 AMFE: -0.591 GC content %: 48.103

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).