Tdicoccoides TRIDC3AG012290
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG012290 [ TRIDC3AG012290] |
3A | 61284178 | 61287780 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG012290.1 TRIDC3AG012290.1 |
Low | No | 2405 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -25.929 AMFE: -0.593 GC content %: 43.701 | |
| Tdicoccoides_TRIDC3AG012290.10 TRIDC3AG012290.10 |
Low | No | 2318 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.759 AMFE: -0.593 GC content %: 43.443 | |
| Tdicoccoides_TRIDC3AG012290.11 TRIDC3AG012290.11 |
Low | No | 2634 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -25.262 AMFE: -0.594 GC content %: 42.559 | |
| Tdicoccoides_TRIDC3AG012290.12 TRIDC3AG012290.12 |
Low | No | 2304 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -25.885 AMFE: -0.575 GC content %: 45.009 | |
| Tdicoccoides_TRIDC3AG012290.13 TRIDC3AG012290.13 |
Low | No | 2762 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.268 AMFE: -0.596 GC content %: 42.397 | |
| Tdicoccoides_TRIDC3AG012290.14 TRIDC3AG012290.14 |
Low | No | 2864 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -25.443 AMFE: -0.598 GC content %: 42.528 | |
| Tdicoccoides_TRIDC3AG012290.15 TRIDC3AG012290.15 |
Low | No | 2855 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -25.194 AMFE: -0.598 GC content %: 42.137 | |
| Tdicoccoides_TRIDC3AG012290.16 TRIDC3AG012290.16 |
Low | No | 2231 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -25.728 AMFE: -0.588 GC content %: 43.747 | |
| Tdicoccoides_TRIDC3AG012290.17 TRIDC3AG012290.17 |
Low | No | 1879 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -27.036 AMFE: -0.575 GC content %: 47.046 | |
| Tdicoccoides_TRIDC3AG012290.18 TRIDC3AG012290.18 |
Low | No | 2537 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.216 AMFE: -0.600 GC content %: 43.713 | |
| Tdicoccoides_TRIDC3AG012290.19 TRIDC3AG012290.19 |
Low | No | 1378 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -24.528 AMFE: -0.590 GC content %: 41.582 | |
| Tdicoccoides_TRIDC3AG012290.2 TRIDC3AG012290.2 |
Low | No | 2897 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -24.860 AMFE: -0.588 GC content %: 42.285 | |
| Tdicoccoides_TRIDC3AG012290.20 TRIDC3AG012290.20 |
Low | No | 2272 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -23.191 AMFE: -0.596 GC content %: 38.908 | |
| Tdicoccoides_TRIDC3AG012290.21 TRIDC3AG012290.21 |
Low | No | 2602 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -23.805 AMFE: -0.628 GC content %: 37.932 | |
| Tdicoccoides_TRIDC3AG012290.22 TRIDC3AG012290.22 |
Low | No | 2054 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -24.231 AMFE: -0.628 GC content %: 38.608 | |
| Tdicoccoides_TRIDC3AG012290.23 TRIDC3AG012290.23 |
High | No | 1522 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -22.444 AMFE: -0.618 GC content %: 36.334 | |
| Tdicoccoides_TRIDC3AG012290.3 TRIDC3AG012290.3 |
Low | No | 2450 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -25.906 AMFE: -0.594 GC content %: 43.592 | |
| Tdicoccoides_TRIDC3AG012290.5 TRIDC3AG012290.5 |
Low | No | 2919 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -24.924 AMFE: -0.590 GC content %: 42.240 | |
| Tdicoccoides_TRIDC3AG012290.6 TRIDC3AG012290.6 |
Low | No | 3158 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -25.016 AMFE: -0.591 GC content %: 42.337 | |
| Tdicoccoides_TRIDC3AG012290.7 TRIDC3AG012290.7 |
Low | No | 2600 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -25.444 AMFE: -0.592 GC content %: 43.000 | |
| Tdicoccoides_TRIDC3AG012290.8 TRIDC3AG012290.8 |
Low | No | 2862 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -24.944 AMFE: -0.595 GC content %: 41.894 | |
| Tdicoccoides_TRIDC3AG012290.9 TRIDC3AG012290.9 |
Low | No | 2352 | OG0000432 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -26.046 AMFE: -0.598 GC content %: 43.580 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG012290.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC3AG012290.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
