Tdicoccoides TRIDC3AG013650
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG013650 [ TRIDC3AG013650] |
3A | 73493743 | 73498580 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG013650.1 TRIDC3AG013650.1 |
High | No | 3051 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -30.420 AMFE: -0.671 GC content %: 45.362 | |
| Tdicoccoides_TRIDC3AG013650.10 TRIDC3AG013650.10 |
High | No | 2077 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -31.647 AMFE: -0.678 GC content %: 46.702 | |
| Tdicoccoides_TRIDC3AG013650.11 TRIDC3AG013650.11 |
High | No | 1840 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -31.793 AMFE: -0.669 GC content %: 47.554 | |
| Tdicoccoides_TRIDC3AG013650.12 TRIDC3AG013650.12 |
High | No | 2512 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.530 AMFE: -0.681 GC content %: 43.352 | |
| Tdicoccoides_TRIDC3AG013650.13 TRIDC3AG013650.13 |
Low | No | 1609 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -31.548 AMFE: -0.660 GC content %: 47.794 | |
| Tdicoccoides_TRIDC3AG013650.14 TRIDC3AG013650.14 |
High | No | 1537 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -31.900 AMFE: -0.659 GC content %: 48.406 | |
| Tdicoccoides_TRIDC3AG013650.15 TRIDC3AG013650.15 |
High | No | 1846 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -31.511 AMFE: -0.673 GC content %: 46.804 | |
| Tdicoccoides_TRIDC3AG013650.16 TRIDC3AG013650.16 |
High | No | 1554 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -30.309 AMFE: -0.667 GC content %: 45.431 | |
| Tdicoccoides_TRIDC3AG013650.17 TRIDC3AG013650.17 |
High | No | 2359 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -26.927 AMFE: -0.675 GC content %: 39.890 | |
| Tdicoccoides_TRIDC3AG013650.18 TRIDC3AG013650.18 |
High | No | 1104 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -29.447 AMFE: -0.661 GC content %: 44.565 | |
| Tdicoccoides_TRIDC3AG013650.19 TRIDC3AG013650.19 |
High | No | 1831 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -25.057 AMFE: -0.658 GC content %: 38.067 | |
| Tdicoccoides_TRIDC3AG013650.2 TRIDC3AG013650.2 |
High | No | 2814 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -30.380 AMFE: -0.663 GC content %: 45.807 | |
| Tdicoccoides_TRIDC3AG013650.3 TRIDC3AG013650.3 |
High | No | 1674 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -34.624 AMFE: -0.660 GC content %: 52.449 | |
| Tdicoccoides_TRIDC3AG013650.4 TRIDC3AG013650.4 |
High | No | 2127 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -33.206 AMFE: -0.663 GC content %: 50.118 | |
| Tdicoccoides_TRIDC3AG013650.5 TRIDC3AG013650.5 |
High | No | 2333 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -32.563 AMFE: -0.665 GC content %: 48.950 | |
| Tdicoccoides_TRIDC3AG013650.6 TRIDC3AG013650.6 |
High | No | 2092 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -32.682 AMFE: -0.654 GC content %: 49.952 | |
| Tdicoccoides_TRIDC3AG013650.7 TRIDC3AG013650.7 |
High | No | 2076 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -32.852 AMFE: -0.661 GC content %: 49.711 | |
| Tdicoccoides_TRIDC3AG013650.8 TRIDC3AG013650.8 |
High | No | 2577 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -30.151 AMFE: -0.687 GC content %: 43.888 | |
| Tdicoccoides_TRIDC3AG013650.9 TRIDC3AG013650.9 |
High | No | 1655 | OG0000428 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -32.876 AMFE: -0.678 GC content %: 48.459 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG013650.13 | SwissProt | 2021-04-01 | Q6K1U4 | 8.88e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
