Tdicoccoides TRIDC3AG018200

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC3AG018200
[ TRIDC3AG018200]
3A 122752219 122759548 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC3AG018200.19
TRIDC3AG018200.19
Low No 797 OG0015249
Coding potential...
Type: noncoding Potential: -1.207
Folding energies...
MFEI: -25.922 AMFE: -0.589
GC content
%: 44.040
Tdicoccoides_TRIDC3AG018200.2
TRIDC3AG018200.2
Low No 925 OG0015249
Coding potential...
Type: noncoding Potential: -1.106
Folding energies...
MFEI: -26.054 AMFE: -0.554
GC content
%: 47.027
Tdicoccoides_TRIDC3AG018200.3
TRIDC3AG018200.3
Low No 819 OG0015249
Coding potential...
Type: noncoding Potential: -1.037
Folding energies...
MFEI: -24.725 AMFE: -0.522
GC content
%: 47.375
Tdicoccoides_TRIDC3AG018200.4
TRIDC3AG018200.4
High No 573 OG0015249
Coding potential...
Type: noncoding Potential: -1.170
Folding energies...
MFEI: -23.979 AMFE: -0.515
GC content
%: 46.597


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Tdicoccoides_TRIDC3AG018200.19  SwissProt 2021-04-01 Q5QNI1 8.41e-4
Tdicoccoides_TRIDC3AG018200.2  SwissProt 2021-04-01 Q5QNI1 1.0e-3
Tdicoccoides_TRIDC3AG018200.3  SwissProt 2021-04-01 Q5QNI1 3.65e-5


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC3AG018200.png