Tdicoccoides TRIDC3AG024610
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG024610 [ TRIDC3AG024610] |
3A | 203916730 | 203919973 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG024610.1 TRIDC3AG024610.1 |
Low | No | 1255 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -26.088 AMFE: -0.612 GC content %: 42.629 | |
| Tdicoccoides_TRIDC3AG024610.5 TRIDC3AG024610.5 |
Low | No | 1095 | OG0015258 | Get ORF Coding potential... Type: noncoding Potential: -0.010 Folding energies... MFEI: -27.068 AMFE: -0.656 GC content %: 41.279 | |
| Tdicoccoides_TRIDC3AG024610.6 TRIDC3AG024610.6 |
Low | No | 1206 | OG0015258 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -27.148 AMFE: -0.657 GC content %: 41.294 | |
| Tdicoccoides_TRIDC3AG024610.7 TRIDC3AG024610.7 |
Low | No | 993 | OG0015258 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -27.795 AMFE: -0.659 GC content %: 42.195 | |
| Tdicoccoides_TRIDC3AG024610.8 TRIDC3AG024610.8 |
Low | No | 666 | OG0015258 | Get ORF Coding potential... Type: noncoding Potential: -0.179 Folding energies... MFEI: -28.589 AMFE: -0.654 GC content %: 43.694 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG024610.7 | SwissProt | 2021-04-01 | Q84WU2 | 7.06e-19 |
| Tdicoccoides_TRIDC3AG024610.8 | SwissProt | 2021-04-01 | Q84PW3 | 1.87e-12 |
| Tdicoccoides_TRIDC3AG024610.1 | SwissProt | 2021-04-01 | Q9FPT1 | 8.46e-10 |
| Tdicoccoides_TRIDC3AG024610.5 | SwissProt | 2021-04-01 | Q84WU2 | 1.24e-18 |
| Tdicoccoides_TRIDC3AG024610.6 | SwissProt | 2021-04-01 | Q84WU2 | 2.08e-18 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
