Tdicoccoides TRIDC3AG025970
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG025970 [ TRIDC3AG025970] |
3A | 227901462 | 227904091 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG025970.1 TRIDC3AG025970.1 |
High | No | 679 | OG0009404 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -23.751 AMFE: -0.458 GC content %: 51.841 | |
| Tdicoccoides_TRIDC3AG025970.2 TRIDC3AG025970.2 |
Low | No | 1176 | OG0009404 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -27.670 AMFE: -0.623 GC content %: 44.388 | |
| Tdicoccoides_TRIDC3AG025970.3 TRIDC3AG025970.3 |
Low | No | 1359 | OG0009404 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -25.953 AMFE: -0.586 GC content %: 44.297 | |
| Tdicoccoides_TRIDC3AG025970.4 TRIDC3AG025970.4 |
High | No | 230 | OG0009404 | Get ORF Coding potential... Type: noncoding Potential: -1.356 Folding energies... MFEI: -19.826 AMFE: -0.470 GC content %: 42.174 | |
| Tdicoccoides_TRIDC3AG025970.5 TRIDC3AG025970.5 |
Low | No | 270 | OG0357731 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -22.593 AMFE: -0.575 GC content %: 39.259 | |
| Tdicoccoides_TRIDC3AG025970.7 TRIDC3AG025970.7 |
Low | No | 851 | OG0009404 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -23.655 AMFE: -0.639 GC content %: 37.015 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG025970.5 | SwissProt | 2021-04-01 | Q9M2J9 | 5.7e-10 |
| Tdicoccoides_TRIDC3AG025970.7 | SwissProt | 2021-04-01 | Q9M2J9 | 1.33e-8 |
| Tdicoccoides_TRIDC3AG025970.2 | SwissProt | 2021-04-01 | Q9M2J9 | 1.23e-6 |
| Tdicoccoides_TRIDC3AG025970.3 | SwissProt | 2021-04-01 | Q9M2J9 | 1.47e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
