Tdicoccoides TRIDC3AG027850
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG027850 [ TRIDC3AG027850] |
3A | 282157678 | 282164997 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG027850.1 TRIDC3AG027850.1 |
High | No | 3141 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -25.543 AMFE: -0.579 GC content %: 44.126 | |
| Tdicoccoides_TRIDC3AG027850.10 TRIDC3AG027850.10 |
High | No | 1512 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -26.442 AMFE: -0.570 GC content %: 46.429 | |
| Tdicoccoides_TRIDC3AG027850.11 TRIDC3AG027850.11 |
High | No | 1347 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -26.310 AMFE: -0.549 GC content %: 47.884 | |
| Tdicoccoides_TRIDC3AG027850.12 TRIDC3AG027850.12 |
High | No | 2918 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -25.717 AMFE: -0.585 GC content %: 43.968 | |
| Tdicoccoides_TRIDC3AG027850.13 TRIDC3AG027850.13 |
High | No | 3513 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -25.298 AMFE: -0.586 GC content %: 43.182 | |
| Tdicoccoides_TRIDC3AG027850.14 TRIDC3AG027850.14 |
High | No | 1087 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -25.805 AMFE: -0.547 GC content %: 47.194 | |
| Tdicoccoides_TRIDC3AG027850.15 TRIDC3AG027850.15 |
High | No | 1283 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -24.396 AMFE: -0.551 GC content %: 44.271 | |
| Tdicoccoides_TRIDC3AG027850.16 TRIDC3AG027850.16 |
High | No | 3407 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -22.295 AMFE: -0.594 GC content %: 37.511 | |
| Tdicoccoides_TRIDC3AG027850.17 TRIDC3AG027850.17 |
High | No | 2177 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -22.774 AMFE: -0.580 GC content %: 39.274 | |
| Tdicoccoides_TRIDC3AG027850.18 TRIDC3AG027850.18 |
High | No | 2232 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -22.872 AMFE: -0.558 GC content %: 40.995 | |
| Tdicoccoides_TRIDC3AG027850.19 TRIDC3AG027850.19 |
High | No | 1777 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -21.877 AMFE: -0.557 GC content %: 39.280 | |
| Tdicoccoides_TRIDC3AG027850.2 TRIDC3AG027850.2 |
High | No | 3468 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -25.269 AMFE: -0.581 GC content %: 43.512 | |
| Tdicoccoides_TRIDC3AG027850.20 TRIDC3AG027850.20 |
High | No | 2479 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -21.396 AMFE: -0.576 GC content %: 37.152 | |
| Tdicoccoides_TRIDC3AG027850.21 TRIDC3AG027850.21 |
High | No | 2801 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -21.733 AMFE: -0.568 GC content %: 38.272 | |
| Tdicoccoides_TRIDC3AG027850.22 TRIDC3AG027850.22 |
High | No | 1201 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -22.668 AMFE: -0.550 GC content %: 41.216 | |
| Tdicoccoides_TRIDC3AG027850.23 TRIDC3AG027850.23 |
High | No | 1036 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -21.959 AMFE: -0.605 GC content %: 36.293 | |
| Tdicoccoides_TRIDC3AG027850.3 TRIDC3AG027850.3 |
High | No | 4224 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -24.389 AMFE: -0.585 GC content %: 41.690 | |
| Tdicoccoides_TRIDC3AG027850.4 TRIDC3AG027850.4 |
High | No | 1214 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -28.386 AMFE: -0.574 GC content %: 49.423 | |
| Tdicoccoides_TRIDC3AG027850.5 TRIDC3AG027850.5 |
High | No | 4399 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -24.424 AMFE: -0.587 GC content %: 41.600 | |
| Tdicoccoides_TRIDC3AG027850.6 TRIDC3AG027850.6 |
High | No | 3792 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -24.684 AMFE: -0.575 GC content %: 42.906 | |
| Tdicoccoides_TRIDC3AG027850.7 TRIDC3AG027850.7 |
High | No | 2827 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -26.003 AMFE: -0.589 GC content %: 44.146 | |
| Tdicoccoides_TRIDC3AG027850.8 TRIDC3AG027850.8 |
High | No | 1414 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.273 AMFE: -0.565 GC content %: 46.535 | |
| Tdicoccoides_TRIDC3AG027850.9 TRIDC3AG027850.9 |
High | No | 1423 | OG0000379 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -26.578 AMFE: -0.572 GC content %: 46.451 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
