Tdicoccoides TRIDC3AG028580
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG028580 [ TRIDC3AG028580] |
3A | 311957161 | 311961208 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG028580.1 TRIDC3AG028580.1 |
High | No | 291 | OG0357768 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -26.079 AMFE: -0.393 GC content %: 66.323 | |
| Tdicoccoides_TRIDC3AG028580.11 TRIDC3AG028580.11 |
Low | No | 2373 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -26.856 AMFE: -0.642 GC content %: 41.846 | |
| Tdicoccoides_TRIDC3AG028580.12 TRIDC3AG028580.12 |
Low | No | 1801 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -27.463 AMFE: -0.642 GC content %: 42.754 | |
| Tdicoccoides_TRIDC3AG028580.14 TRIDC3AG028580.14 |
High | No | 1676 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -25.668 AMFE: -0.645 GC content %: 39.797 | |
| Tdicoccoides_TRIDC3AG028580.15 TRIDC3AG028580.15 |
Low | No | 1635 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -25.829 AMFE: -0.651 GC content %: 39.694 | |
| Tdicoccoides_TRIDC3AG028580.16 TRIDC3AG028580.16 |
High | No | 1475 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -25.817 AMFE: -0.649 GC content %: 39.797 | |
| Tdicoccoides_TRIDC3AG028580.17 TRIDC3AG028580.17 |
Low | No | 689 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -23.846 AMFE: -0.630 GC content %: 37.881 | |
| Tdicoccoides_TRIDC3AG028580.8 TRIDC3AG028580.8 |
Low | No | 1959 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -28.014 AMFE: -0.646 GC content %: 43.338 | |
| Tdicoccoides_TRIDC3AG028580.9 TRIDC3AG028580.9 |
Low | No | 1868 | OG0003574 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -27.950 AMFE: -0.641 GC content %: 43.576 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG028580.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.8 | SwissProt | 2021-04-01 | Q65XK1 | 1.17e-18 |
| Tdicoccoides_TRIDC3AG028580.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.9 | SwissProt | 2021-04-01 | Q65XK1 | 1.11e-18 |
| Tdicoccoides_TRIDC3AG028580.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.11 | SwissProt | 2021-04-01 | Q65XK1 | 1.46e-18 |
| Tdicoccoides_TRIDC3AG028580.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3AG028580.12 | SwissProt | 2021-04-01 | Q65XK1 | 7.55e-19 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
