Tdicoccoides TRIDC3AG063850
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG063850 [ TRIDC3AG063850] |
3A | 685690358 | 685697298 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG063850.1 TRIDC3AG063850.1 |
Low | No | 1550 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -26.303 AMFE: -0.619 GC content %: 42.516 | |
| Tdicoccoides_TRIDC3AG063850.10 TRIDC3AG063850.10 |
Low | No | 883 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -24.032 AMFE: -0.566 GC content %: 42.469 | |
| Tdicoccoides_TRIDC3AG063850.11 TRIDC3AG063850.11 |
High | No | 871 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -27.497 AMFE: -0.562 GC content %: 48.909 | |
| Tdicoccoides_TRIDC3AG063850.12 TRIDC3AG063850.12 |
High | No | 1185 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -24.692 AMFE: -0.640 GC content %: 38.565 | |
| Tdicoccoides_TRIDC3AG063850.13 TRIDC3AG063850.13 |
High | No | 826 | OG0358361 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -24.407 AMFE: -0.636 GC content %: 38.378 | |
| Tdicoccoides_TRIDC3AG063850.2 TRIDC3AG063850.2 |
Low | No | 1794 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -26.488 AMFE: -0.629 GC content %: 42.140 | |
| Tdicoccoides_TRIDC3AG063850.3 TRIDC3AG063850.3 |
Low | No | 1810 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.448 AMFE: -0.631 GC content %: 41.934 | |
| Tdicoccoides_TRIDC3AG063850.4 TRIDC3AG063850.4 |
Low | No | 1665 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -25.502 AMFE: -0.607 GC content %: 41.982 | |
| Tdicoccoides_TRIDC3AG063850.5 TRIDC3AG063850.5 |
Low | No | 1630 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -25.583 AMFE: -0.626 GC content %: 40.859 | |
| Tdicoccoides_TRIDC3AG063850.6 TRIDC3AG063850.6 |
Low | No | 1223 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -25.045 AMFE: -0.608 GC content %: 41.210 | |
| Tdicoccoides_TRIDC3AG063850.7 TRIDC3AG063850.7 |
Low | No | 1750 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -27.057 AMFE: -0.619 GC content %: 43.714 | |
| Tdicoccoides_TRIDC3AG063850.8 TRIDC3AG063850.8 |
Low | No | 1725 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -27.096 AMFE: -0.617 GC content %: 43.942 | |
| Tdicoccoides_TRIDC3AG063850.9 TRIDC3AG063850.9 |
Low | No | 1015 | OG0001114 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -24.562 AMFE: -0.582 GC content %: 42.167 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3AG063850.8 | SwissProt | 2021-04-01 | Q10KL8 | 3.12e-5 |
| Tdicoccoides_TRIDC3AG063850.3 | SwissProt | 2021-04-01 | Q10KL8 | 2.26e-5 |
| Tdicoccoides_TRIDC3AG063850.9 | SwissProt | 2021-04-01 | Q10KL8 | 3.12e-5 |
| Tdicoccoides_TRIDC3AG063850.4 | SwissProt | 2021-04-01 | Q10KL8 | 1.66e-5 |
| Tdicoccoides_TRIDC3AG063850.5 | SwissProt | 2021-04-01 | Q10KL8 | 3.63e-5 |
| Tdicoccoides_TRIDC3AG063850.1 | SwissProt | 2021-04-01 | Q10KL8 | 6.72e-6 |
| Tdicoccoides_TRIDC3AG063850.6 | SwissProt | 2021-04-01 | Q10KL8 | 2.4e-5 |
| Tdicoccoides_TRIDC3AG063850.10 | SwissProt | 2021-04-01 | Q10KL8 | 2.57e-4 |
| Tdicoccoides_TRIDC3AG063850.7 | SwissProt | 2021-04-01 | Q10KL8 | 3.17e-5 |
| Tdicoccoides_TRIDC3AG063850.2 | SwissProt | 2021-04-01 | Q10KL8 | 2.24e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
