GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC3AG075270 [ TRIDC3AG075270]	3A	748054448	748163069	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC3AG075270.1 TRIDC3AG075270.1	High	No	340	OG0002741		Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -29.912 AMFE: -0.632 GC content %: 47.353
Tdicoccoides_TRIDC3AG075270.2 TRIDC3AG075270.2	High	No	402	OG0002741		Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -28.980 AMFE: -0.658 GC content %: 44.030
Tdicoccoides_TRIDC3AG075270.3 TRIDC3AG075270.3	High	No	473	OG0002741		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -26.258 AMFE: -0.606 GC content %: 43.340

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).