Tdicoccoides TRIDC3BG003170
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG003170 [ TRIDC3BG003170] |
3B | 10958486 | 10962582 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG003170.1 TRIDC3BG003170.1 |
Low | No | 1388 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -25.872 AMFE: -0.651 GC content %: 39.769 | |
| Tdicoccoides_TRIDC3BG003170.10 TRIDC3BG003170.10 |
Low | No | 1176 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -24.847 AMFE: -0.652 GC content %: 38.095 | |
| Tdicoccoides_TRIDC3BG003170.11 TRIDC3BG003170.11 |
Low | No | 576 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -23.872 AMFE: -0.590 GC content %: 40.451 | |
| Tdicoccoides_TRIDC3BG003170.12 TRIDC3BG003170.12 |
Low | No | 555 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -22.432 AMFE: -0.593 GC content %: 37.838 | |
| Tdicoccoides_TRIDC3BG003170.2 TRIDC3BG003170.2 |
Low | No | 975 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -27.179 AMFE: -0.645 GC content %: 42.154 | |
| Tdicoccoides_TRIDC3BG003170.3 TRIDC3BG003170.3 |
Low | No | 1286 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -31.781 AMFE: -0.648 GC content %: 49.067 | |
| Tdicoccoides_TRIDC3BG003170.4 TRIDC3BG003170.4 |
Low | No | 1199 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -32.060 AMFE: -0.640 GC content %: 50.125 | |
| Tdicoccoides_TRIDC3BG003170.5 TRIDC3BG003170.5 |
High | No | 1257 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -23.453 AMFE: -0.596 GC content %: 39.379 | |
| Tdicoccoides_TRIDC3BG003170.6 TRIDC3BG003170.6 |
Low | No | 625 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -26.608 AMFE: -0.596 GC content %: 44.640 | |
| Tdicoccoides_TRIDC3BG003170.7 TRIDC3BG003170.7 |
Low | No | 1116 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -24.937 AMFE: -0.620 GC content %: 40.233 | |
| Tdicoccoides_TRIDC3BG003170.8 TRIDC3BG003170.8 |
Low | No | 1401 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -0.338 Folding energies... MFEI: -24.097 AMFE: -0.629 GC content %: 38.330 | |
| Tdicoccoides_TRIDC3BG003170.9 TRIDC3BG003170.9 |
Low | No | 935 | OG0001496 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -24.168 AMFE: -0.614 GC content %: 39.358 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG003170.9 | SwissProt | 2021-04-01 | Q9LRZ3 | 1.4e-4 |
| Tdicoccoides_TRIDC3BG003170.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3BG003170.3 | SwissProt | 2021-04-01 | Q9LRZ3 | 4.25e-7 |
| Tdicoccoides_TRIDC3BG003170.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3BG003170.1 | SwissProt | 2021-04-01 | Q9LRZ3 | 4.69e-5 |
| Tdicoccoides_TRIDC3BG003170.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3BG003170.4 | SwissProt | 2021-04-01 | Q9LRZ3 | 3.68e-7 |
| Tdicoccoides_TRIDC3BG003170.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Tdicoccoides_TRIDC3BG003170.10 | SwissProt | 2021-04-01 | Q9LRZ3 | 3.5e-5 |
| Tdicoccoides_TRIDC3BG003170.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
