Tdicoccoides TRIDC3BG009150
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009150 [ TRIDC3BG009150] |
3B | 45444859 | 45449400 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009150.1 TRIDC3BG009150.1 |
High | No | 1486 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -28.917 AMFE: -0.610 GC content %: 47.376 | |
| Tdicoccoides_TRIDC3BG009150.2 TRIDC3BG009150.2 |
Low | No | 2826 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -28.263 AMFE: -0.648 GC content %: 43.595 | |
| Tdicoccoides_TRIDC3BG009150.3 TRIDC3BG009150.3 |
Low | No | 2448 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -29.624 AMFE: -0.661 GC content %: 44.812 | |
| Tdicoccoides_TRIDC3BG009150.4 TRIDC3BG009150.4 |
Low | No | 2473 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -28.423 AMFE: -0.636 GC content %: 44.683 | |
| Tdicoccoides_TRIDC3BG009150.5 TRIDC3BG009150.5 |
Low | No | 2103 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -29.957 AMFE: -0.648 GC content %: 46.220 | |
| Tdicoccoides_TRIDC3BG009150.6 TRIDC3BG009150.6 |
Low | No | 981 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -25.331 AMFE: -0.611 GC content %: 41.488 | |
| Tdicoccoides_TRIDC3BG009150.7 TRIDC3BG009150.7 |
Low | No | 1889 | OG0004505 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -27.110 AMFE: -0.683 GC content %: 39.704 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009150.5 | SwissProt | 2021-04-01 | Q9SU91 | 9.29e-12 |
| Tdicoccoides_TRIDC3BG009150.6 | SwissProt | 2021-04-01 | Q9SAF5 | 7.88e-4 |
| Tdicoccoides_TRIDC3BG009150.7 | SwissProt | 2021-04-01 | Q9SU91 | 5.58e-10 |
| Tdicoccoides_TRIDC3BG009150.2 | SwissProt | 2021-04-01 | Q9SU91 | 3.25e-6 |
| Tdicoccoides_TRIDC3BG009150.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Tdicoccoides_TRIDC3BG009150.3 | SwissProt | 2021-04-01 | Q9SU91 | 2.71e-6 |
| Tdicoccoides_TRIDC3BG009150.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Tdicoccoides_TRIDC3BG009150.4 | SwissProt | 2021-04-01 | Q9SU91 | 2.74e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
