Tdicoccoides TRIDC3BG009790
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009790 [ TRIDC3BG009790] |
3B | 49931921 | 49935929 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009790.1 TRIDC3BG009790.1 |
Low | No | 1991 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -25.118 AMFE: -0.635 GC content %: 39.528 | |
| Tdicoccoides_TRIDC3BG009790.10 TRIDC3BG009790.10 |
Low | No | 796 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -36.822 AMFE: -0.691 GC content %: 53.266 | |
| Tdicoccoides_TRIDC3BG009790.11 TRIDC3BG009790.11 |
Low | No | 683 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -34.671 AMFE: -0.643 GC content %: 53.880 | |
| Tdicoccoides_TRIDC3BG009790.12 TRIDC3BG009790.12 |
Low | No | 916 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -33.384 AMFE: -0.663 GC content %: 50.328 | |
| Tdicoccoides_TRIDC3BG009790.13 TRIDC3BG009790.13 |
Low | No | 665 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -35.594 AMFE: -0.648 GC content %: 54.887 | |
| Tdicoccoides_TRIDC3BG009790.2 TRIDC3BG009790.2 |
Low | No | 2985 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -29.398 AMFE: -0.657 GC content %: 44.757 | |
| Tdicoccoides_TRIDC3BG009790.3 TRIDC3BG009790.3 |
Low | No | 3031 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -29.258 AMFE: -0.654 GC content %: 44.738 | |
| Tdicoccoides_TRIDC3BG009790.4 TRIDC3BG009790.4 |
Low | No | 2814 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -30.327 AMFE: -0.656 GC content %: 46.233 | |
| Tdicoccoides_TRIDC3BG009790.5 TRIDC3BG009790.5 |
Low | No | 1870 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -34.374 AMFE: -0.663 GC content %: 51.818 | |
| Tdicoccoides_TRIDC3BG009790.6 TRIDC3BG009790.6 |
Low | No | 769 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -32.497 AMFE: -0.634 GC content %: 51.235 | |
| Tdicoccoides_TRIDC3BG009790.7 TRIDC3BG009790.7 |
Low | No | 1107 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -34.896 AMFE: -0.654 GC content %: 53.388 | |
| Tdicoccoides_TRIDC3BG009790.8 TRIDC3BG009790.8 |
Low | No | 613 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -36.542 AMFE: -0.649 GC content %: 56.281 | |
| Tdicoccoides_TRIDC3BG009790.9 TRIDC3BG009790.9 |
Low | No | 567 | OG0000348 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -37.549 AMFE: -0.655 GC content %: 57.319 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG009790.5 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.56e-6 |
| Tdicoccoides_TRIDC3BG009790.12 | SwissProt | 2021-04-01 | Q8L6Y1 | 5.3e-7 |
| Tdicoccoides_TRIDC3BG009790.6 | SwissProt | 2021-04-01 | Q8L6Y1 | 1.2e-7 |
| Tdicoccoides_TRIDC3BG009790.13 | SwissProt | 2021-04-01 | Q8L6Y1 | 8.09e-8 |
| Tdicoccoides_TRIDC3BG009790.7 | SwissProt | 2021-04-01 | Q8L6Y1 | 5.92e-7 |
| Tdicoccoides_TRIDC3BG009790.2 | SwissProt | 2021-04-01 | Q8L6Y1 | 2.99e-6 |
| Tdicoccoides_TRIDC3BG009790.1 | SwissProt | 2021-04-01 | A0A178 | 2.59e-4 |
| Tdicoccoides_TRIDC3BG009790.8 | SwissProt | 2021-04-01 | Q8L6Y1 | 9.3e-8 |
| Tdicoccoides_TRIDC3BG009790.3 | SwissProt | 2021-04-01 | Q8L6Y1 | 3.05e-6 |
| Tdicoccoides_TRIDC3BG009790.10 | SwissProt | 2021-04-01 | Q8L6Y1 | 2.4e-7 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
