Tdicoccoides TRIDC3BG014050
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG014050 [ TRIDC3BG014050] |
3B | 76187778 | 76214456 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG014050.1 TRIDC3BG014050.1 |
Low | No | 3916 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -36.660 AMFE: -0.706 GC content %: 51.915 | |
| Tdicoccoides_TRIDC3BG014050.10 TRIDC3BG014050.10 |
Low | No | 3364 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -38.115 AMFE: -0.709 GC content %: 53.775 | |
| Tdicoccoides_TRIDC3BG014050.13 TRIDC3BG014050.13 |
Low | No | 3513 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -37.771 AMFE: -0.707 GC content %: 53.430 | |
| Tdicoccoides_TRIDC3BG014050.17 TRIDC3BG014050.17 |
Low | No | 2820 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -38.301 AMFE: -0.700 GC content %: 54.752 | |
| Tdicoccoides_TRIDC3BG014050.18 TRIDC3BG014050.18 |
Low | No | 3388 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -37.302 AMFE: -0.698 GC content %: 53.453 | |
| Tdicoccoides_TRIDC3BG014050.32 TRIDC3BG014050.32 |
Low | No | 3265 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.171 Folding energies... MFEI: -38.064 AMFE: -0.720 GC content %: 52.833 | |
| Tdicoccoides_TRIDC3BG014050.34 TRIDC3BG014050.34 |
Low | No | 3283 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -38.111 AMFE: -0.722 GC content %: 52.818 | |
| Tdicoccoides_TRIDC3BG014050.35 TRIDC3BG014050.35 |
Low | No | 3459 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.258 Folding energies... MFEI: -37.259 AMFE: -0.720 GC content %: 51.778 | |
| Tdicoccoides_TRIDC3BG014050.36 TRIDC3BG014050.36 |
Low | No | 3576 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -37.287 AMFE: -0.723 GC content %: 51.594 | |
| Tdicoccoides_TRIDC3BG014050.4 TRIDC3BG014050.4 |
Low | No | 3638 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -37.741 AMFE: -0.707 GC content %: 53.408 | |
| Tdicoccoides_TRIDC3BG014050.43 TRIDC3BG014050.43 |
Low | No | 3053 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.161 Folding energies... MFEI: -37.694 AMFE: -0.712 GC content %: 52.932 | |
| Tdicoccoides_TRIDC3BG014050.48 TRIDC3BG014050.48 |
Low | No | 2699 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.095 Folding energies... MFEI: -37.332 AMFE: -0.713 GC content %: 52.390 | |
| Tdicoccoides_TRIDC3BG014050.49 TRIDC3BG014050.49 |
Low | No | 3044 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -35.831 AMFE: -0.711 GC content %: 50.361 | |
| Tdicoccoides_TRIDC3BG014050.50 TRIDC3BG014050.50 |
Low | No | 2317 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -36.966 AMFE: -0.700 GC content %: 52.827 | |
| Tdicoccoides_TRIDC3BG014050.8 TRIDC3BG014050.8 |
Low | No | 3820 | OG0000955 | Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -37.081 AMFE: -0.708 GC content %: 52.356 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG014050.49 | SwissProt | 2021-04-01 | Q9LDZ0 | 2.03e-12 |
| Tdicoccoides_TRIDC3BG014050.35 | SwissProt | 2021-04-01 | Q6K471 | 2.04e-8 |
| Tdicoccoides_TRIDC3BG014050.13 | SwissProt | 2021-04-01 | Q6K471 | 3.77e-8 |
| Tdicoccoides_TRIDC3BG014050.50 | SwissProt | 2021-04-01 | Q9LDZ0 | 1.79e-12 |
| Tdicoccoides_TRIDC3BG014050.36 | SwissProt | 2021-04-01 | Q6K471 | 3.84e-8 |
| Tdicoccoides_TRIDC3BG014050.17 | SwissProt | 2021-04-01 | Q6K471 | 2.96e-8 |
| Tdicoccoides_TRIDC3BG014050.8 | SwissProt | 2021-04-01 | O49856 | 3.4e-7 |
| Tdicoccoides_TRIDC3BG014050.4 | SwissProt | 2021-04-01 | O49856 | 3.23e-7 |
| Tdicoccoides_TRIDC3BG014050.18 | SwissProt | 2021-04-01 | Q6K471 | 3.62e-8 |
| Tdicoccoides_TRIDC3BG014050.43 | SwissProt | 2021-04-01 | Q6K471 | 3.23e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
