Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC3BG015290 [ TRIDC3BG015290] |
3B | 84074897 | 84079010 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC3BG015290.10 TRIDC3BG015290.10 |
High | No | 1926 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.420 AMFE: -0.626 GC content %: 43.821 | |
Tdicoccoides_TRIDC3BG015290.12 TRIDC3BG015290.12 |
High | No | 416 | OG0358718 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -23.582 AMFE: -0.667 GC content %: 35.337 | |
Tdicoccoides_TRIDC3BG015290.15 TRIDC3BG015290.15 |
High | No | 992 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -28.871 AMFE: -0.620 GC content %: 46.573 | |
Tdicoccoides_TRIDC3BG015290.16 TRIDC3BG015290.16 |
High | No | 617 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -26.062 AMFE: -0.712 GC content %: 36.629 | |
Tdicoccoides_TRIDC3BG015290.17 TRIDC3BG015290.17 |
High | No | 1436 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -25.682 AMFE: -0.680 GC content %: 37.744 | |
Tdicoccoides_TRIDC3BG015290.19 TRIDC3BG015290.19 |
High | No | 1027 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -29.601 AMFE: -0.603 GC content %: 49.075 | |
Tdicoccoides_TRIDC3BG015290.3 TRIDC3BG015290.3 |
High | No | 1725 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -24.070 AMFE: -0.659 GC content %: 36.522 | |
Tdicoccoides_TRIDC3BG015290.4 TRIDC3BG015290.4 |
High | No | 2012 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -24.935 AMFE: -0.663 GC content %: 37.624 | |
Tdicoccoides_TRIDC3BG015290.5 TRIDC3BG015290.5 |
High | No | 2088 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -26.729 AMFE: -0.664 GC content %: 40.230 | |
Tdicoccoides_TRIDC3BG015290.6 TRIDC3BG015290.6 |
High | No | 2182 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -25.371 AMFE: -0.661 GC content %: 38.405 | |
Tdicoccoides_TRIDC3BG015290.9 TRIDC3BG015290.9 |
High | No | 1879 | OG0002258 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -27.445 AMFE: -0.663 GC content %: 41.405 |