Tdicoccoides TRIDC3BG017610
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG017610 [ TRIDC3BG017610] |
3B | 108785211 | 108791190 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG017610.1 TRIDC3BG017610.1 |
Low | No | 2348 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -32.824 AMFE: -0.650 GC content %: 50.468 | |
| Tdicoccoides_TRIDC3BG017610.10 TRIDC3BG017610.10 |
Low | No | 3596 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -31.265 AMFE: -0.684 GC content %: 45.690 | |
| Tdicoccoides_TRIDC3BG017610.11 TRIDC3BG017610.11 |
Low | No | 3462 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -31.467 AMFE: -0.686 GC content %: 45.898 | |
| Tdicoccoides_TRIDC3BG017610.12 TRIDC3BG017610.12 |
Low | No | 2343 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -33.303 AMFE: -0.652 GC content %: 51.046 | |
| Tdicoccoides_TRIDC3BG017610.13 TRIDC3BG017610.13 |
Low | No | 2264 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -33.167 AMFE: -0.647 GC content %: 51.281 | |
| Tdicoccoides_TRIDC3BG017610.14 TRIDC3BG017610.14 |
Low | No | 2308 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -33.085 AMFE: -0.651 GC content %: 50.823 | |
| Tdicoccoides_TRIDC3BG017610.15 TRIDC3BG017610.15 |
Low | No | 2031 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -31.413 AMFE: -0.660 GC content %: 47.563 | |
| Tdicoccoides_TRIDC3BG017610.16 TRIDC3BG017610.16 |
Low | No | 1569 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -29.496 AMFE: -0.650 GC content %: 45.379 | |
| Tdicoccoides_TRIDC3BG017610.17 TRIDC3BG017610.17 |
Low | No | 2153 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -31.096 AMFE: -0.649 GC content %: 47.887 | |
| Tdicoccoides_TRIDC3BG017610.18 TRIDC3BG017610.18 |
Low | No | 2928 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -31.178 AMFE: -0.664 GC content %: 46.926 | |
| Tdicoccoides_TRIDC3BG017610.19 TRIDC3BG017610.19 |
Low | No | 2389 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -31.339 AMFE: -0.638 GC content %: 49.142 | |
| Tdicoccoides_TRIDC3BG017610.2 TRIDC3BG017610.2 |
Low | No | 2341 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -33.400 AMFE: -0.658 GC content %: 50.790 | |
| Tdicoccoides_TRIDC3BG017610.20 TRIDC3BG017610.20 |
Low | No | 2669 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -31.266 AMFE: -0.639 GC content %: 48.932 | |
| Tdicoccoides_TRIDC3BG017610.21 TRIDC3BG017610.21 |
Low | No | 2092 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -32.275 AMFE: -0.644 GC content %: 50.096 | |
| Tdicoccoides_TRIDC3BG017610.22 TRIDC3BG017610.22 |
Low | No | 1828 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -33.244 AMFE: -0.639 GC content %: 52.024 | |
| Tdicoccoides_TRIDC3BG017610.23 TRIDC3BG017610.23 |
Low | No | 1412 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -28.902 AMFE: -0.654 GC content %: 44.193 | |
| Tdicoccoides_TRIDC3BG017610.3 TRIDC3BG017610.3 |
Low | No | 2412 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -33.147 AMFE: -0.655 GC content %: 50.580 | |
| Tdicoccoides_TRIDC3BG017610.4 TRIDC3BG017610.4 |
Low | No | 2542 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -32.533 AMFE: -0.651 GC content %: 49.961 | |
| Tdicoccoides_TRIDC3BG017610.5 TRIDC3BG017610.5 |
Low | No | 2318 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -33.421 AMFE: -0.655 GC content %: 50.992 | |
| Tdicoccoides_TRIDC3BG017610.6 TRIDC3BG017610.6 |
Low | No | 2314 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -33.271 AMFE: -0.654 GC content %: 50.908 | |
| Tdicoccoides_TRIDC3BG017610.7 TRIDC3BG017610.7 |
Low | No | 1683 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -30.024 AMFE: -0.675 GC content %: 44.504 | |
| Tdicoccoides_TRIDC3BG017610.8 TRIDC3BG017610.8 |
Low | No | 1477 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -29.763 AMFE: -0.658 GC content %: 45.227 | |
| Tdicoccoides_TRIDC3BG017610.9 TRIDC3BG017610.9 |
Low | No | 2437 | OG0000098 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -32.909 AMFE: -0.654 GC content %: 50.349 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG017610.12 | SwissProt | 2021-04-01 | Q66GR3 | 2.3e-4 |
| Tdicoccoides_TRIDC3BG017610.6 | SwissProt | 2021-04-01 | Q66GR3 | 2.26e-4 |
| Tdicoccoides_TRIDC3BG017610.22 | SwissProt | 2021-04-01 | Q66GR3 | 1.66e-4 |
| Tdicoccoides_TRIDC3BG017610.18 | SwissProt | 2021-04-01 | Q66GR3 | 3.03e-4 |
| Tdicoccoides_TRIDC3BG017610.13 | SwissProt | 2021-04-01 | Q66GR3 | 2.2e-4 |
| Tdicoccoides_TRIDC3BG017610.7 | SwissProt | 2021-04-01 | Q66GR3 | 1.48e-4 |
| Tdicoccoides_TRIDC3BG017610.23 | SwissProt | 2021-04-01 | Q66GR3 | 1.14e-4 |
| Tdicoccoides_TRIDC3BG017610.19 | SwissProt | 2021-04-01 | Q66GR3 | 2.35e-4 |
| Tdicoccoides_TRIDC3BG017610.14 | SwissProt | 2021-04-01 | Q66GR3 | 2.26e-4 |
| Tdicoccoides_TRIDC3BG017610.8 | SwissProt | 2021-04-01 | Q66GR3 | 1.22e-4 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
