Tdicoccoides TRIDC3BG019110
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG019110 [ TRIDC3BG019110] |
3B | 126892099 | 126897839 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG019110.1 TRIDC3BG019110.1 |
Low | No | 3089 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -28.223 AMFE: -0.675 GC content %: 41.826 | |
| Tdicoccoides_TRIDC3BG019110.10 TRIDC3BG019110.10 |
Low | No | 2712 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -28.245 AMFE: -0.683 GC content %: 41.372 | |
| Tdicoccoides_TRIDC3BG019110.11 TRIDC3BG019110.11 |
Low | No | 2823 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -28.541 AMFE: -0.694 GC content %: 41.126 | |
| Tdicoccoides_TRIDC3BG019110.12 TRIDC3BG019110.12 |
Low | No | 2534 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.709 AMFE: -0.683 GC content %: 39.108 | |
| Tdicoccoides_TRIDC3BG019110.13 TRIDC3BG019110.13 |
Low | No | 891 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -31.167 AMFE: -0.703 GC content %: 44.332 | |
| Tdicoccoides_TRIDC3BG019110.14 TRIDC3BG019110.14 |
Low | No | 2409 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -27.422 AMFE: -0.702 GC content %: 39.062 | |
| Tdicoccoides_TRIDC3BG019110.15 TRIDC3BG019110.15 |
High | No | 2375 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -26.716 AMFE: -0.687 GC content %: 38.863 | |
| Tdicoccoides_TRIDC3BG019110.16 TRIDC3BG019110.16 |
High | No | 2494 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -26.439 AMFE: -0.679 GC content %: 38.933 | |
| Tdicoccoides_TRIDC3BG019110.2 TRIDC3BG019110.2 |
Low | No | 4154 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -27.277 AMFE: -0.690 GC content %: 39.552 | |
| Tdicoccoides_TRIDC3BG019110.4 TRIDC3BG019110.4 |
Low | No | 2642 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -28.456 AMFE: -0.692 GC content %: 41.143 | |
| Tdicoccoides_TRIDC3BG019110.5 TRIDC3BG019110.5 |
Low | No | 1194 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -32.705 AMFE: -0.695 GC content %: 47.069 | |
| Tdicoccoides_TRIDC3BG019110.6 TRIDC3BG019110.6 |
Low | No | 2709 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -28.667 AMFE: -0.698 GC content %: 41.085 | |
| Tdicoccoides_TRIDC3BG019110.7 TRIDC3BG019110.7 |
Low | No | 2717 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -28.734 AMFE: -0.698 GC content %: 41.185 | |
| Tdicoccoides_TRIDC3BG019110.8 TRIDC3BG019110.8 |
Low | No | 1244 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -32.243 AMFE: -0.694 GC content %: 46.463 | |
| Tdicoccoides_TRIDC3BG019110.9 TRIDC3BG019110.9 |
Low | No | 2713 | OG0000957 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -28.297 AMFE: -0.684 GC content %: 41.393 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG019110.13 | SwissProt | 2021-04-01 | Q657X6 | 1.19e-9 |
| Tdicoccoides_TRIDC3BG019110.7 | SwissProt | 2021-04-01 | Q657X6 | 2.68e-8 |
| Tdicoccoides_TRIDC3BG019110.14 | SwissProt | 2021-04-01 | Q657X6 | 1.05e-8 |
| Tdicoccoides_TRIDC3BG019110.1 | SwissProt | 2021-04-01 | Q657X6 | 1.48e-8 |
| Tdicoccoides_TRIDC3BG019110.8 | SwissProt | 2021-04-01 | Q657X6 | 7.04e-9 |
| Tdicoccoides_TRIDC3BG019110.2 | SwissProt | 2021-04-01 | Q657X6 | 2.47e-8 |
| Tdicoccoides_TRIDC3BG019110.10 | SwissProt | 2021-04-01 | Q657X6 | 9.22e-9 |
| Tdicoccoides_TRIDC3BG019110.9 | SwissProt | 2021-04-01 | Q657X6 | 5.71e-9 |
| Tdicoccoides_TRIDC3BG019110.4 | SwissProt | 2021-04-01 | Q657X6 | 9.21e-9 |
| Tdicoccoides_TRIDC3BG019110.11 | SwissProt | 2021-04-01 | Q657X6 | 1.32e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
