Tdicoccoides TRIDC3BG031550
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG031550 [ TRIDC3BG031550] |
3B | 271844719 | 271849200 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG031550.1 TRIDC3BG031550.1 |
High | No | 1201 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -28.693 AMFE: -0.651 GC content %: 44.047 | |
| Tdicoccoides_TRIDC3BG031550.10 TRIDC3BG031550.10 |
High | No | 2199 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.149 AMFE: -0.663 GC content %: 40.928 | |
| Tdicoccoides_TRIDC3BG031550.11 TRIDC3BG031550.11 |
High | No | 2145 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -26.942 AMFE: -0.660 GC content %: 40.839 | |
| Tdicoccoides_TRIDC3BG031550.12 TRIDC3BG031550.12 |
High | No | 1146 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -28.787 AMFE: -0.661 GC content %: 43.543 | |
| Tdicoccoides_TRIDC3BG031550.13 TRIDC3BG031550.13 |
High | No | 1228 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -28.404 AMFE: -0.664 GC content %: 42.752 | |
| Tdicoccoides_TRIDC3BG031550.14 TRIDC3BG031550.14 |
High | No | 2182 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -26.856 AMFE: -0.667 GC content %: 40.238 | |
| Tdicoccoides_TRIDC3BG031550.15 TRIDC3BG031550.15 |
High | No | 2063 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -27.121 AMFE: -0.668 GC content %: 40.572 | |
| Tdicoccoides_TRIDC3BG031550.16 TRIDC3BG031550.16 |
High | No | 962 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -28.638 AMFE: -0.662 GC content %: 43.243 | |
| Tdicoccoides_TRIDC3BG031550.17 TRIDC3BG031550.17 |
High | No | 1039 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -28.595 AMFE: -0.665 GC content %: 43.022 | |
| Tdicoccoides_TRIDC3BG031550.18 TRIDC3BG031550.18 |
High | No | 1052 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -28.441 AMFE: -0.666 GC content %: 42.681 | |
| Tdicoccoides_TRIDC3BG031550.19 TRIDC3BG031550.19 |
High | No | 1038 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -27.958 AMFE: -0.663 GC content %: 42.197 | |
| Tdicoccoides_TRIDC3BG031550.2 TRIDC3BG031550.2 |
High | No | 2328 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -27.152 AMFE: -0.656 GC content %: 41.366 | |
| Tdicoccoides_TRIDC3BG031550.20 TRIDC3BG031550.20 |
High | No | 1061 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -27.625 AMFE: -0.659 GC content %: 41.942 | |
| Tdicoccoides_TRIDC3BG031550.21 TRIDC3BG031550.21 |
High | No | 976 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.238 AMFE: -0.661 GC content %: 42.725 | |
| Tdicoccoides_TRIDC3BG031550.22 TRIDC3BG031550.22 |
High | No | 1059 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -27.630 AMFE: -0.659 GC content %: 41.926 | |
| Tdicoccoides_TRIDC3BG031550.23 TRIDC3BG031550.23 |
High | No | 927 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -28.177 AMFE: -0.658 GC content %: 42.826 | |
| Tdicoccoides_TRIDC3BG031550.24 TRIDC3BG031550.24 |
High | No | 2148 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.123 AMFE: -0.677 GC content %: 40.084 | |
| Tdicoccoides_TRIDC3BG031550.25 TRIDC3BG031550.25 |
High | No | 871 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -25.637 AMFE: -0.642 GC content %: 39.954 | |
| Tdicoccoides_TRIDC3BG031550.3 TRIDC3BG031550.3 |
High | No | 1728 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -27.182 AMFE: -0.646 GC content %: 42.072 | |
| Tdicoccoides_TRIDC3BG031550.4 TRIDC3BG031550.4 |
High | No | 1132 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -29.717 AMFE: -0.657 GC content %: 45.230 | |
| Tdicoccoides_TRIDC3BG031550.5 TRIDC3BG031550.5 |
High | No | 2207 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.599 AMFE: -0.661 GC content %: 41.731 | |
| Tdicoccoides_TRIDC3BG031550.6 TRIDC3BG031550.6 |
High | No | 2231 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -27.051 AMFE: -0.660 GC content %: 41.013 | |
| Tdicoccoides_TRIDC3BG031550.7 TRIDC3BG031550.7 |
High | No | 2369 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -26.914 AMFE: -0.662 GC content %: 40.650 | |
| Tdicoccoides_TRIDC3BG031550.8 TRIDC3BG031550.8 |
High | No | 1058 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -28.535 AMFE: -0.648 GC content %: 44.045 | |
| Tdicoccoides_TRIDC3BG031550.9 TRIDC3BG031550.9 |
High | No | 945 | OG0000311 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -29.037 AMFE: -0.641 GC content %: 45.291 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
