Tdicoccoides TRIDC3BG033140
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG033140 [ TRIDC3BG033140] |
3B | 320229800 | 320235751 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG033140.1 TRIDC3BG033140.1 |
High | No | 2127 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -22.454 AMFE: -0.633 GC content %: 35.449 | |
| Tdicoccoides_TRIDC3BG033140.10 TRIDC3BG033140.10 |
High | No | 970 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.897 AMFE: -0.613 GC content %: 47.113 | |
| Tdicoccoides_TRIDC3BG033140.2 TRIDC3BG033140.2 |
High | No | 3829 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -27.182 AMFE: -0.647 GC content %: 41.995 | |
| Tdicoccoides_TRIDC3BG033140.3 TRIDC3BG033140.3 |
High | No | 3883 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -27.499 AMFE: -0.648 GC content %: 42.467 | |
| Tdicoccoides_TRIDC3BG033140.4 TRIDC3BG033140.4 |
High | No | 4097 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -24.608 AMFE: -0.642 GC content %: 38.321 | |
| Tdicoccoides_TRIDC3BG033140.5 TRIDC3BG033140.5 |
Low | No | 1444 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -29.945 AMFE: -0.627 GC content %: 47.784 | |
| Tdicoccoides_TRIDC3BG033140.6 TRIDC3BG033140.6 |
High | No | 2009 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -26.351 AMFE: -0.644 GC content %: 40.916 | |
| Tdicoccoides_TRIDC3BG033140.7 TRIDC3BG033140.7 |
High | No | 913 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -31.019 AMFE: -0.601 GC content %: 51.588 | |
| Tdicoccoides_TRIDC3BG033140.8 TRIDC3BG033140.8 |
High | No | 2026 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -30.780 AMFE: -0.645 GC content %: 47.730 | |
| Tdicoccoides_TRIDC3BG033140.9 TRIDC3BG033140.9 |
High | No | 2443 | OG0001491 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -29.587 AMFE: -0.644 GC content %: 45.968 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC3BG033140.5 | SwissProt | 2021-04-01 | F4IP13 | 1.0e-3 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
